Analysis of interatomic Contacts of Structural Units in PDB entry:
4D05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D05 entry

There are 2 chains in PDB entry 4D05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0TYR 257
B
 ILE 5VAL 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4D05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 18Right-handed 310
Helix 2
2
A
49 54Right-handed alpha
Helix 3
3
A
71 80Right-handed alpha
Helix 4
4
A
86 92Right-handed 310
Helix 5
5
A
105 121Right-handed alpha
Helix 6
6
A
135 149Right-handed alpha
Helix 7
7
A
191 194Right-handed 310
Helix 8
8
A
218 224Right-handed alpha
Helix 9
9
A
240 244Right-handed 310
Helix 10
10
B
16 18Right-handed 310
Helix 11
11
B
71 81Right-handed alpha
Helix 12
12
B
86 92Right-handed 310
Helix 13
13
B
105 121Right-handed alpha
Helix 14
14
B
135 149Right-handed alpha
Helix 15
15
B
191 195Right-handed 310
Helix 16
16
B
218 224Right-handed alpha
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There are 6 sheets in PDB entry 4D05. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
167 174parallel
Strand 3
A
153 158anti-parallel
Strand 4
A
20 25anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
29 33anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
93 98anti-parallel
Strand 5
A
125 127parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
198 205anti-parallel
Strand 3
A
178 189anti-parallel
Strand 4
A
231 236anti-parallel
Strand 5
A
249 255anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
171 175parallel
Strand 3
B
153 158anti-parallel
Strand 4
B
20 24anti-parallel
Strand 5
B
131 132anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
29 33anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
93 98anti-parallel
Strand 5
B
125 127parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 213first strand
Strand 2
B
198 205anti-parallel
Strand 3
B
178 189anti-parallel
Strand 4
B
231 236anti-parallel
Strand 5
B
249 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il