Analysis of interatomic Contacts of Structural Units in PDB entry:
4D06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D06 entry

There are 5 chains in PDB entry 4D06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ARG 282
B
 ALA 1ARG 282
C
 ALA 1ARG 282
D
 ALA 1ARG 282
E
 ALA 1GLY 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 4D06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 20Right-handed 310
Helix 2
2
A
21 32Right-handed alpha
Helix 3
3
A
32 42Right-handed alpha
Helix 4
4
A
59 64Right-handed 310
Helix 5
5
A
81 86Right-handed 310
Helix 6
6
A
94 101Right-handed alpha
Helix 7
7
A
119 125Right-handed alpha
Helix 8
8
A
155 158Right-handed 310
Helix 9
9
A
174 185Right-handed alpha
Helix 10
10
A
185 193Right-handed alpha
Helix 11
11
A
205 209Right-handed 310
Helix 12
12
A
223 232Right-handed alpha
Helix 13
13
A
233 238Right-handed 310
Helix 14
14
A
270 275Right-handed alpha
Helix 15
15
B
18 20Right-handed 310
Helix 16
16
B
21 32Right-handed alpha
Helix 17
17
B
32 42Right-handed alpha
Helix 18
18
B
59 64Right-handed 310
Helix 19
19
B
81 86Right-handed 310
Helix 20
20
B
95 101Right-handed alpha
Helix 21
21
B
155 158Right-handed 310
Helix 22
22
B
174 185Right-handed alpha
Helix 23
23
B
185 193Right-handed alpha
Helix 24
24
B
223 232Right-handed alpha
Helix 25
25
B
233 238Right-handed 310
Helix 26
26
B
271 275Right-handed alpha
Helix 27
27
C
18 20Right-handed 310
Helix 28
28
C
21 32Right-handed alpha
Helix 29
29
C
32 42Right-handed alpha
Helix 30
30
C
59 64Right-handed 310
Helix 31
31
C
81 86Right-handed 310
Helix 32
32
C
94 101Right-handed alpha
Helix 33
33
C
119 125Right-handed alpha
Helix 34
34
C
155 158Right-handed 310
Helix 35
35
C
174 185Right-handed alpha
Helix 36
36
C
185 193Right-handed alpha
Helix 37
37
C
205 209Right-handed 310
Helix 38
38
C
223 232Right-handed alpha
Helix 39
39
C
233 238Right-handed 310
Helix 40
40
C
270 275Right-handed alpha
Helix 41
41
D
18 20Right-handed 310
Helix 42
42
D
21 32Right-handed alpha
Helix 43
43
D
32 42Right-handed alpha
Helix 44
44
D
59 64Right-handed 310
Helix 45
45
D
81 86Right-handed 310
Helix 46
46
D
94 101Right-handed alpha
Helix 47
47
D
155 158Right-handed 310
Helix 48
48
D
174 185Right-handed alpha
Helix 49
49
D
185 193Right-handed alpha
Helix 50
50
D
223 232Right-handed alpha
Helix 51
51
D
233 238Right-handed 310
Helix 52
52
D
270 275Right-handed alpha
Helix 53
53
E
18 20Right-handed 310
Helix 54
54
E
21 32Right-handed alpha
Helix 55
55
E
32 42Right-handed alpha
Helix 56
56
E
59 64Right-handed 310
Helix 57
57
E
81 86Right-handed 310
Helix 58
58
E
94 101Right-handed alpha
Helix 59
59
E
119 125Right-handed alpha
Helix 60
60
E
155 158Right-handed 310
Helix 61
61
E
174 185Right-handed alpha
Helix 62
62
E
185 193Right-handed alpha
Helix 63
63
E
223 232Right-handed alpha
Helix 64
64
E
233 238Right-handed 310
Helix 65
65
E
271 275Right-handed alpha
Helix 66
66
F
18 20Right-handed 310
Helix 67
67
F
21 32Right-handed alpha
Helix 68
68
F
32 42Right-handed alpha
Helix 69
69
F
59 64Right-handed 310
Helix 70
70
F
81 86Right-handed 310
Helix 71
71
F
94 101Right-handed alpha
Helix 72
72
F
155 158Right-handed 310
Helix 73
73
F
174 185Right-handed alpha
Helix 74
74
F
185 193Right-handed alpha
Helix 75
75
F
223 232Right-handed alpha
Helix 76
76
F
233 238Right-handed 310
Helix 77
77
F
270 275Right-handed alpha
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There are 12 sheets in PDB entry 4D06. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 52first strand
Strand 2
A
69 75anti-parallel
Strand 3
A
8 14anti-parallel
Strand 4
A
137 140anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
196 203anti-parallel
Strand 3
A
215 221anti-parallel
Strand 4
A
161 167anti-parallel
Strand 5
A
258 263anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 140first strand
Strand 2
B
8 14anti-parallel
Strand 3
B
69 75anti-parallel
Strand 4
B
45 52anti-parallel
Strand 5
B
269 270anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
215 221anti-parallel
Strand 4
B
161 167anti-parallel
Strand 5
B
258 263anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 52first strand
Strand 2
C
69 75anti-parallel
Strand 3
C
8 14anti-parallel
Strand 4
C
137 140anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 149first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
215 221anti-parallel
Strand 4
C
161 167anti-parallel
Strand 5
C
258 263anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
45 52first strand
Strand 2
D
69 75anti-parallel
Strand 3
D
8 14anti-parallel
Strand 4
D
137 140anti-parallel
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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
146 149first strand
Strand 2
D
196 203anti-parallel
Strand 3
D
215 221anti-parallel
Strand 4
D
161 167anti-parallel
Strand 5
D
258 263anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
137 140first strand
Strand 2
E
8 14anti-parallel
Strand 3
E
69 75anti-parallel
Strand 4
E
45 52anti-parallel
Strand 5
E
269 270anti-parallel
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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
146 149first strand
Strand 2
E
196 203anti-parallel
Strand 3
E
215 221anti-parallel
Strand 4
E
161 167anti-parallel
Strand 5
E
258 263anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 52first strand
Strand 2
F
69 75anti-parallel
Strand 3
F
8 14anti-parallel
Strand 4
F
137 140anti-parallel
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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
146 149first strand
Strand 2
F
196 203anti-parallel
Strand 3
F
215 221anti-parallel
Strand 4
F
161 167anti-parallel
Strand 5
F
258 263anti-parallel
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