Analysis of interatomic Contacts of Structural Units in PDB entry:
4D0G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D0G entry

There are 2 chains in PDB entry 4D0G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 8GLN 174
C
 GLU 595THR 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4D0G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 34Right-handed alpha
Helix 2
2
A
76 82Right-handed alpha
Helix 3
3
A
95 101Right-handed alpha
Helix 4
4
A
101 113Right-handed alpha
Helix 5
5
A
128 132Right-handed 310
Helix 6
6
A
135 146Right-handed alpha
Helix 7
7
A
160 173Right-handed alpha
Helix 8
8
C
598 632Right-handed alpha
Helix 9
9
C
633 636Right-handed 310
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There is 1 sheet ( AA) in PDB entry 4D0G.

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 55first strand
Strand 2
A
58 67anti-parallel
Strand 3
A
11 17parallel
Strand 4
A
86 92parallel
Strand 5
A
118 124parallel
Strand 6
A
149 152parallel
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