Analysis of interatomic Contacts of Structural Units in PDB entry:
4D0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D0K entry

There are 3 chains in PDB entry 4D0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 345
B
 ASN 451LYS 555
C
 LEU 447LYS 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4D0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
453 464Right-handed alpha
Helix 2
2
B
483 493Right-handed alpha
Helix 3
3
B
506 518Right-handed alpha
Helix 4
4
B
539 554Right-handed alpha
Helix 5
5
C
452 464Right-handed alpha
Helix 6
6
C
480 493Right-handed alpha
Helix 7
7
C
506 518Right-handed alpha
Helix 8
8
C
539 554Right-handed alpha
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There are 10 sheets in PDB entry 4D0K. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AI, BA, CA,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 12first strand
Strand 2
A
305 310anti-parallel
Strand 3
A
297 301anti-parallel
Strand 4
A
285 290anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
45 50anti-parallel
Strand 4
A
55 61anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
87 91anti-parallel
Strand 4
A
97 102anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 114first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
130 135anti-parallel
Strand 4
A
140 146anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 156first strand
Strand 2
A
160 164anti-parallel
Strand 3
A
168 172anti-parallel
Strand 4
A
179 184anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 196first strand
Strand 2
A
199 205anti-parallel
Strand 3
A
220 225anti-parallel
Strand 4
A
230 232anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
253 257anti-parallel
Strand 3
A
262 267anti-parallel
Strand 4
A
275 278anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
235 236anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
523 527first strand
Strand 2
B
534 538anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
523 527first strand
Strand 2
C
534 538anti-parallel
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