Analysis of interatomic Contacts of Structural Units in PDB entry:
4D0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D0L entry

There are 6 chains in PDB entry 4D0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 128SER 784
B
 ASP 6GLN 178
C
 SER 128SER 784
D
 ASP 6SER 182
E
 SER 128SER 784
F
 ASP 6SER 182
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are101 helices in PDB entry 4D0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
128 135Right-handed alpha
Helix 2
2
A
140 151Right-handed alpha
Helix 3
3
A
153 164Right-handed alpha
Helix 4
4
A
165 167Right-handed 310
Helix 5
5
A
168 174Right-handed alpha
Helix 6
6
A
175 186Right-handed alpha
Helix 7
7
A
187 219Right-handed alpha
Helix 8
8
A
232 242Right-handed alpha
Helix 9
9
A
307 324Right-handed alpha
Helix 10
10
A
325 327Right-handed 310
Helix 11
11
A
329 343Right-handed alpha
Helix 12
12
A
344 348Right-handed 310
Helix 13
13
A
367 371Right-handed 310
Helix 14
14
A
521 533Right-handed alpha
Helix 15
15
A
554 574Right-handed alpha
Helix 16
16
A
604 612Right-handed alpha
Helix 17
17
A
614 624Right-handed alpha
Helix 18
18
A
628 653Right-handed alpha
Helix 19
19
A
696 703Right-handed alpha
Helix 20
20
A
708 727Right-handed alpha
Helix 21
21
A
728 740Right-handed alpha
Helix 22
22
A
745 749Right-handed 310
Helix 23
23
A
752 760Right-handed alpha
Helix 24
24
A
766 784Right-handed alpha
Helix 25
25
B
23 34Right-handed alpha
Helix 26
26
B
70 72Right-handed 310
Helix 27
27
B
73 78Right-handed alpha
Helix 28
28
B
79 82Right-handed 310
Helix 29
29
B
95 101Right-handed alpha
Helix 30
30
B
101 108Right-handed alpha
Helix 31
31
B
108 113Right-handed alpha
Helix 32
32
B
128 132Right-handed 310
Helix 33
33
B
135 146Right-handed alpha
Helix 34
34
B
160 174Right-handed alpha
Helix 35
35
C
128 135Right-handed alpha
Helix 36
36
C
140 151Right-handed alpha
Helix 37
37
C
153 164Right-handed alpha
Helix 38
38
C
165 167Right-handed 310
Helix 39
39
C
168 174Right-handed alpha
Helix 40
40
C
175 186Right-handed alpha
Helix 41
41
C
187 219Right-handed alpha
Helix 42
42
C
231 243Right-handed alpha
Helix 43
43
C
307 324Right-handed alpha
Helix 44
44
C
325 327Right-handed 310
Helix 45
45
C
329 343Right-handed alpha
Helix 46
46
C
344 348Right-handed 310
Helix 47
47
C
367 371Right-handed 310
Helix 48
48
C
521 533Right-handed alpha
Helix 49
49
C
554 574Right-handed alpha
Helix 50
50
C
604 610Right-handed alpha
Helix 51
51
C
614 624Right-handed alpha
Helix 52
52
C
628 653Right-handed alpha
Helix 53
53
C
696 703Right-handed alpha
Helix 54
54
C
708 727Right-handed alpha
Helix 55
55
C
728 740Right-handed alpha
Helix 56
56
C
745 749Right-handed 310
Helix 57
57
C
752 760Right-handed alpha
Helix 58
58
C
766 784Right-handed alpha
Helix 59
59
D
23 34Right-handed alpha
Helix 60
60
D
70 72Right-handed 310
Helix 61
61
D
73 78Right-handed alpha
Helix 62
62
D
79 82Right-handed 310
Helix 63
63
D
95 101Right-handed alpha
Helix 64
64
D
103 108Right-handed alpha
Helix 65
65
D
128 132Right-handed 310
Helix 66
66
D
135 146Right-handed alpha
Helix 67
67
D
160 182Right-handed alpha
Helix 68
68
E
128 135Right-handed alpha
Helix 69
69
E
140 151Right-handed alpha
Helix 70
70
E
153 164Right-handed alpha
Helix 71
71
E
165 167Right-handed 310
Helix 72
72
E
168 174Right-handed alpha
Helix 73
73
E
175 186Right-handed alpha
Helix 74
74
E
187 220Right-handed alpha
Helix 75
75
E
232 243Right-handed alpha
Helix 76
76
E
307 324Right-handed alpha
Helix 77
77
E
325 327Right-handed 310
Helix 78
78
E
329 343Right-handed alpha
Helix 79
79
E
344 348Right-handed 310
Helix 80
80
E
367 371Right-handed 310
Helix 81
81
E
521 533Right-handed alpha
Helix 82
82
E
554 574Right-handed alpha
Helix 83
83
E
604 612Right-handed alpha
Helix 84
84
E
614 624Right-handed alpha
Helix 85
85
E
628 653Right-handed alpha
Helix 86
86
E
696 703Right-handed alpha
Helix 87
87
E
708 727Right-handed alpha
Helix 88
88
E
728 740Right-handed alpha
Helix 89
89
E
745 749Right-handed 310
Helix 90
90
E
752 760Right-handed alpha
Helix 91
91
E
766 784Right-handed alpha
Helix 92
92
F
23 34Right-handed alpha
Helix 93
93
F
70 72Right-handed 310
Helix 94
94
F
73 78Right-handed alpha
Helix 95
95
F
79 82Right-handed 310
Helix 96
96
F
95 101Right-handed alpha
Helix 97
97
F
103 108Right-handed alpha
Helix 98
98
F
128 132Right-handed 310
Helix 99
99
F
135 146Right-handed alpha
Helix 100
100
F
160 177Right-handed alpha
Helix 101
101
F
177 182Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 4D0L. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, CA, CB, CC, CD, CE, A, EA, EB, EC, ED, EE, FA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 365first strand
Strand 2
A
382 390anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
382 390anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 587first strand
Strand 2
A
593 595anti-parallel
Strand 3
A
541 549anti-parallel
Strand 4
A
382 390anti-parallel
Strand 5
A
372 373anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 587first strand
Strand 2
A
593 595anti-parallel
Strand 3
A
541 549anti-parallel
Strand 4
A
382 390anti-parallel
Strand 5
A
361 365anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 603first strand
Strand 2
A
662 665anti-parallel
Strand 3
A
670 672anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 55first strand
Strand 2
B
58 66anti-parallel
Strand 3
B
10 18parallel
Strand 4
B
86 92parallel
Strand 5
B
118 124parallel
Strand 6
B
149 153parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
361 365first strand
Strand 2
C
382 390anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
372 373first strand
Strand 2
C
382 390anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
585 589first strand
Strand 2
C
592 595anti-parallel
Strand 3
C
541 549anti-parallel
Strand 4
C
382 390anti-parallel
Strand 5
C
372 373anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
585 589first strand
Strand 2
C
592 595anti-parallel
Strand 3
C
541 549anti-parallel
Strand 4
C
382 390anti-parallel
Strand 5
C
361 365anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
601 603first strand
Strand 2
C
662 665anti-parallel
Strand 3
C
670 672anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 55first strand
Strand 2
D
58 67anti-parallel
Strand 3
D
10 18parallel
Strand 4
D
86 92parallel
Strand 5
D
118 124parallel
Strand 6
D
149 153parallel
Back to list of sheets
Back to top of page

There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
361 365first strand
Strand 2
E
382 390anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
372 373first strand
Strand 2
E
382 390anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
585 589first strand
Strand 2
E
592 595anti-parallel
Strand 3
E
541 549anti-parallel
Strand 4
E
382 390anti-parallel
Strand 5
E
372 373anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
585 589first strand
Strand 2
E
592 595anti-parallel
Strand 3
E
541 549anti-parallel
Strand 4
E
382 390anti-parallel
Strand 5
E
361 365anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
601 603first strand
Strand 2
E
662 665anti-parallel
Strand 3
E
670 672anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
46 55first strand
Strand 2
F
58 67anti-parallel
Strand 3
F
10 18parallel
Strand 4
F
86 92parallel
Strand 5
F
118 124parallel
Strand 6
F
149 153parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il