Analysis of interatomic Contacts of Structural Units in PDB entry:
4D0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D0O entry

There are 2 chains in PDB entry 4D0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1968ARG 2204
B
 GLU 1968GLU 2207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4D0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1969 1985Right-handed alpha
Helix 2
2
A
1986 1991Right-handed alpha
Helix 3
3
A
1993 2023Right-handed alpha
Helix 4
4
A
2023 2032Right-handed alpha
Helix 5
5
A
2035 2043Right-handed alpha
Helix 6
6
A
2045 2066Right-handed alpha
Helix 7
7
A
2081 2089Right-handed alpha
Helix 8
8
A
2090 2135Right-handed alpha
Helix 9
9
A
2142 2154Right-handed alpha
Helix 10
10
A
2156 2168Right-handed alpha
Helix 11
11
A
2171 2204Right-handed alpha
Helix 12
12
B
1969 1985Right-handed alpha
Helix 13
13
B
1986 1991Right-handed alpha
Helix 14
14
B
1993 2023Right-handed alpha
Helix 15
15
B
2023 2032Right-handed alpha
Helix 16
16
B
2035 2043Right-handed alpha
Helix 17
17
B
2045 2066Right-handed alpha
Helix 18
18
B
2081 2089Right-handed alpha
Helix 19
19
B
2090 2135Right-handed alpha
Helix 20
20
B
2142 2154Right-handed alpha
Helix 21
21
B
2156 2168Right-handed alpha
Helix 22
22
B
2171 2207Right-handed alpha
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There are no sheets in PDB entry 4D0O
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il