Analysis of interatomic Contacts of Structural Units in PDB entry:
4D0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D0P entry

There is 1 chain in PDB entry 4D0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -8GLU 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4D0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 13Right-handed alpha
Helix 2
2
A
18 35Right-handed alpha
Helix 3
3
A
38 54Right-handed alpha
Helix 4
4
A
58 73Right-handed alpha
Helix 5
5
A
74 76Right-handed 310
Helix 6
6
A
77 93Right-handed alpha
Helix 7
7
A
94 98Right-handed 310
Helix 8
8
A
99 117Right-handed alpha
Helix 9
9
A
119 129Right-handed alpha
Helix 10
10
A
140 158Right-handed alpha
Helix 11
11
A
160 173Right-handed alpha
Helix 12
12
A
174 178Right-handed 310
Helix 13
13
A
180 198Right-handed alpha
Helix 14
14
A
200 212Right-handed alpha
Helix 15
15
A
218 236Right-handed alpha
Helix 16
16
A
239 252Right-handed alpha
Helix 17
17
A
253 259Right-handed 310
Helix 18
18
A
260 269Right-handed alpha
Helix 19
19
A
274 277Right-handed 310
Helix 20
20
A
278 284Right-handed alpha
Helix 21
21
A
286 291Right-handed 310
Helix 22
22
A
298 316Right-handed alpha
Helix 23
23
A
321 329Right-handed alpha
Helix 24
24
A
331 345Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 4D0P.

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
358 361anti-parallel
Strand 3
A
350 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il