Analysis of interatomic Contacts of Structural Units in PDB entry:
4D0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D0Y entry

There are 2 chains in PDB entry 4D0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 55ASP 238
B
 ALA 55ASP 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4D0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
91 108Right-handed alpha
Helix 2
2
A
121 133Right-handed alpha
Helix 3
3
A
136 145Right-handed alpha
Helix 4
4
A
151 156Right-handed 310
Helix 5
5
A
171 182Right-handed alpha
Helix 6
6
A
183 185Right-handed 310
Helix 7
7
A
195 200Right-handed alpha
Helix 8
8
A
214 222Right-handed alpha
Helix 9
9
A
224 230Right-handed alpha
Helix 10
10
B
91 108Right-handed alpha
Helix 11
11
B
121 145Right-handed alpha
Helix 12
12
B
151 156Right-handed 310
Helix 13
13
B
167 182Right-handed alpha
Helix 14
14
B
183 185Right-handed 310
Helix 15
15
B
195 200Right-handed alpha
Helix 16
16
B
214 222Right-handed alpha
Helix 17
17
B
224 230Right-handed alpha
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There are 4 sheets in PDB entry 4D0Y. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
72 75anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
158 163anti-parallel
Strand 3
A
207 210anti-parallel
Strand 4
A
187 189anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
72 75anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 117first strand
Strand 2
B
158 163anti-parallel
Strand 3
B
207 210anti-parallel
Strand 4
B
187 189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il