Analysis of interatomic Contacts of Structural Units in PDB entry:
4D1E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D1E entry

There are 14 chains in PDB entry 4D1E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 34ARG 41
A
 THR 43LEU 70
A
 LEU 72HIS 95
A
 ILE 97ASN 101
A
 ALA 103ARG 163
A
 THR 165TRP 180
A
 ASP 182PRO 238
A
 PRO 240LYS 318
A
 LEU 320ARG 328
A
 HIS 330HIS 330
A
 PRO 332ARG 442
A
 HIS 444PHE 561
A
 ALA 563TYR 688
A
 ASN 690SER 892
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 4D1E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 56Right-handed alpha
Helix 2
2
A
61 66Right-handed alpha
Helix 3
3
A
69 81Right-handed alpha
Helix 4
4
A
92 111Right-handed alpha
Helix 5
5
A
119 124Right-handed alpha
Helix 6
6
A
126 142Right-handed alpha
Helix 7
7
A
153 165Right-handed alpha
Helix 8
8
A
183 194Right-handed alpha
Helix 9
9
A
195 198Right-handed 310
Helix 10
10
A
207 221Right-handed alpha
Helix 11
11
A
230 237Right-handed alpha
Helix 12
12
A
241 257Right-handed alpha
Helix 13
13
A
258 282Right-handed alpha
Helix 14
14
A
284 294Right-handed alpha
Helix 15
15
A
295 306Right-handed alpha
Helix 16
16
A
313 330Right-handed alpha
Helix 17
17
A
330 355Right-handed alpha
Helix 18
18
A
367 369Right-handed 310
Helix 19
19
A
370 389Right-handed alpha
Helix 20
20
A
392 418Right-handed alpha
Helix 21
21
A
421 426Right-handed alpha
Helix 22
22
A
433 471Right-handed alpha
Helix 23
23
A
475 540Right-handed alpha
Helix 24
24
A
547 590Right-handed alpha
Helix 25
25
A
603 665Right-handed alpha
Helix 26
26
A
670 705Right-handed alpha
Helix 27
27
A
718 747Right-handed alpha
Helix 28
28
A
752 763Right-handed alpha
Helix 29
29
A
776 785Right-handed alpha
Helix 30
30
A
793 800Right-handed alpha
Helix 31
31
A
811 821Right-handed alpha
Helix 32
32
A
827 836Right-handed alpha
Helix 33
33
A
846 854Right-handed alpha
Helix 34
34
A
855 866Right-handed alpha
Helix 35
35
A
880 889Right-handed alpha
Back to top of page

There is 1 sheet ( AA) in PDB entry 4D1E.

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
151 152anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il