Analysis of interatomic Contacts of Structural Units in PDB entry:
4D1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D1M entry

There are 12 chains in PDB entry 4D1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 303ARG 340
B
 GLU 303LYS 342
C
 GLU 302GLN 341
D
 GLU 303GLN 341
E
 GLU 303MET 344
F
 GLU 303PHE 343
G
 GLU 302GLN 341
H
 GLU 303LYS 342
I
 GLU 303GLN 341
J
 GLU 303GLN 341
K
 GLU 302GLN 341
L
 GLU 303GLN 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4D1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
311 331Right-handed alpha
Helix 2
2
A
332 340Right-handed alpha
Helix 3
3
B
311 331Right-handed alpha
Helix 4
4
B
332 342Right-handed alpha
Helix 5
5
C
311 331Right-handed alpha
Helix 6
6
C
332 341Right-handed alpha
Helix 7
7
D
311 331Right-handed alpha
Helix 8
8
D
332 341Right-handed alpha
Helix 9
9
E
311 331Right-handed alpha
Helix 10
10
E
332 343Right-handed alpha
Helix 11
11
F
311 329Right-handed alpha
Helix 12
12
F
332 343Right-handed alpha
Helix 13
13
G
311 331Right-handed alpha
Helix 14
14
G
332 340Right-handed alpha
Helix 15
15
H
311 329Right-handed alpha
Helix 16
16
H
332 342Right-handed alpha
Helix 17
17
I
311 329Right-handed alpha
Helix 18
18
I
332 340Right-handed alpha
Helix 19
19
J
311 331Right-handed alpha
Helix 20
20
J
332 341Right-handed alpha
Helix 21
21
K
311 331Right-handed alpha
Helix 22
22
K
332 341Right-handed alpha
Helix 23
23
L
311 331Right-handed alpha
Helix 24
24
L
332 340Right-handed alpha
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There are 6 sheets in PDB entry 4D1M. Click on sheet of interest to get list of strands forming it: AA, CA, EA, GA, IA, KA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 310first strand
Strand 2
B
304 310anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
304 310first strand
Strand 2
D
304 310anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
304 310first strand
Strand 2
F
304 310anti-parallel
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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
304 310first strand
Strand 2
H
304 310anti-parallel
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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
304 310first strand
Strand 2
J
304 310anti-parallel
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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
304 310first strand
Strand 2
L
304 310anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il