Analysis of interatomic Contacts of Structural Units in PDB entry:
4D1Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D1Q entry

There are 12 chains in PDB entry 4D1Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 81LYS 609
B
 HIS 77LYS 609
C
 A 1 A 15
D
 T 1 G 16
E
 A 1 A 15
F
 T 1 G 16
G
 LEU 83LYS 609
H
 LEU 83LYS 609
I
 A 1 A 15
J
 T 1 G 16
K
 A 1 A 15
L
 T 1 G 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 4D1Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 105Right-handed alpha
Helix 2
2
A
108 112Right-handed 310
Helix 3
3
A
114 132Right-handed alpha
Helix 4
4
A
136 141Right-handed alpha
Helix 5
5
A
143 172Right-handed alpha
Helix 6
6
A
220 234Right-handed alpha
Helix 7
7
A
250 257Right-handed alpha
Helix 8
8
A
258 260Right-handed 310
Helix 9
9
A
265 280Right-handed alpha
Helix 10
10
A
281 283Right-handed 310
Helix 11
11
A
284 301Right-handed alpha
Helix 12
12
A
303 307Right-handed 310
Helix 13
13
A
320 331Right-handed alpha
Helix 14
14
A
332 343Right-handed alpha
Helix 15
15
A
353 374Right-handed alpha
Helix 16
16
A
381 383Right-handed 310
Helix 17
17
A
384 396Right-handed alpha
Helix 18
18
A
403 421Right-handed alpha
Helix 19
19
A
422 425Right-handed 310
Helix 20
20
A
426 435Right-handed alpha
Helix 21
21
A
445 461Right-handed alpha
Helix 22
22
A
499 505Right-handed alpha
Helix 23
23
A
519 528Right-handed alpha
Helix 24
24
A
539 548Right-handed alpha
Helix 25
25
A
551 562Right-handed alpha
Helix 26
26
A
568 582Right-handed alpha
Helix 27
27
A
584 589Right-handed 310
Helix 28
28
A
590 608Right-handed alpha
Helix 29
29
B
87 106Right-handed alpha
Helix 30
30
B
108 113Right-handed 310
Helix 31
31
B
114 132Right-handed alpha
Helix 32
32
B
136 141Right-handed alpha
Helix 33
33
B
143 172Right-handed alpha
Helix 34
34
B
220 234Right-handed alpha
Helix 35
35
B
250 257Right-handed alpha
Helix 36
36
B
265 280Right-handed alpha
Helix 37
37
B
281 283Right-handed 310
Helix 38
38
B
284 301Right-handed alpha
Helix 39
39
B
303 307Right-handed 310
Helix 40
40
B
320 342Right-handed alpha
Helix 41
41
B
353 374Right-handed alpha
Helix 42
42
B
381 383Right-handed 310
Helix 43
43
B
384 396Right-handed alpha
Helix 44
44
B
403 421Right-handed alpha
Helix 45
45
B
422 425Right-handed 310
Helix 46
46
B
426 435Right-handed alpha
Helix 47
47
B
444 461Right-handed alpha
Helix 48
48
B
499 505Right-handed alpha
Helix 49
49
B
519 529Right-handed alpha
Helix 50
50
B
539 547Right-handed alpha
Helix 51
51
B
551 563Right-handed alpha
Helix 52
52
B
568 582Right-handed alpha
Helix 53
53
B
590 607Right-handed alpha
Helix 54
54
G
87 105Right-handed alpha
Helix 55
55
G
108 112Right-handed 310
Helix 56
56
G
114 132Right-handed alpha
Helix 57
57
G
136 141Right-handed alpha
Helix 58
58
G
143 162Right-handed alpha
Helix 59
59
G
162 172Right-handed alpha
Helix 60
60
G
220 233Right-handed alpha
Helix 61
61
G
250 255Right-handed alpha
Helix 62
62
G
265 280Right-handed alpha
Helix 63
63
G
281 283Right-handed 310
Helix 64
64
G
284 301Right-handed alpha
Helix 65
65
G
303 307Right-handed 310
Helix 66
66
G
320 332Right-handed alpha
Helix 67
67
G
332 342Right-handed alpha
Helix 68
68
G
354 374Right-handed alpha
Helix 69
69
G
381 383Right-handed 310
Helix 70
70
G
384 396Right-handed alpha
Helix 71
71
G
403 420Right-handed alpha
Helix 72
72
G
421 425Right-handed 310
Helix 73
73
G
426 435Right-handed alpha
Helix 74
74
G
440 444Right-handed 310
Helix 75
75
G
445 461Right-handed alpha
Helix 76
76
G
499 505Right-handed alpha
Helix 77
77
G
519 530Right-handed alpha
Helix 78
78
G
539 547Right-handed alpha
Helix 79
79
G
551 561Right-handed alpha
Helix 80
80
G
568 580Right-handed alpha
Helix 81
81
G
590 608Right-handed alpha
Helix 82
82
H
87 106Right-handed alpha
Helix 83
83
H
108 113Right-handed 310
Helix 84
84
H
114 130Right-handed alpha
Helix 85
85
H
136 141Right-handed alpha
Helix 86
86
H
143 172Right-handed alpha
Helix 87
87
H
220 234Right-handed alpha
Helix 88
88
H
250 258Right-handed alpha
Helix 89
89
H
265 280Right-handed alpha
Helix 90
90
H
281 283Right-handed 310
Helix 91
91
H
284 301Right-handed alpha
Helix 92
92
H
303 307Right-handed 310
Helix 93
93
H
320 332Right-handed alpha
Helix 94
94
H
332 343Right-handed alpha
Helix 95
95
H
348 352Right-handed 310
Helix 96
96
H
353 374Right-handed alpha
Helix 97
97
H
381 383Right-handed 310
Helix 98
98
H
384 396Right-handed alpha
Helix 99
99
H
403 421Right-handed alpha
Helix 100
100
H
422 425Right-handed 310
Helix 101
101
H
426 435Right-handed alpha
Helix 102
102
H
445 462Right-handed alpha
Helix 103
103
H
499 505Right-handed alpha
Helix 104
104
H
506 511Right-handed alpha
Helix 105
105
H
519 529Right-handed alpha
Helix 106
106
H
539 547Right-handed alpha
Helix 107
107
H
548 550Right-handed 310
Helix 108
108
H
551 563Right-handed alpha
Helix 109
109
H
568 579Right-handed alpha
Helix 110
110
H
590 607Right-handed alpha
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There are 6 sheets in PDB entry 4D1Q. Click on sheet of interest to get list of strands forming it: AA, BA, GA, GB, HA, HB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 213first strand
Strand 2
A
190 200anti-parallel
Strand 3
A
176 183anti-parallel
Strand 4
A
244 247parallel
Strand 5
A
261 264parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 213first strand
Strand 2
B
190 200anti-parallel
Strand 3
B
175 183anti-parallel
Strand 4
B
244 247parallel
Strand 5
B
261 264parallel
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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
207 213first strand
Strand 2
G
190 197anti-parallel
Strand 3
G
176 183anti-parallel
Strand 4
G
244 247parallel
Strand 5
G
261 264parallel
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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
199 200first strand
Strand 2
G
203 204anti-parallel
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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
207 213first strand
Strand 2
H
190 197anti-parallel
Strand 3
H
176 183anti-parallel
Strand 4
H
244 247parallel
Strand 5
H
262 264parallel
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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
199 200first strand
Strand 2
H
203 204anti-parallel
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