Analysis of interatomic Contacts of Structural Units in PDB entry:
4D28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D28 entry

There are 4 chains in PDB entry 4D28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8ASP 289
B
 ARG 7ASP 289
C
 ARG 7ASP 289
D
 LYS 10ASP 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4D28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 49Right-handed alpha
Helix 2
2
A
52 66Right-handed alpha
Helix 3
3
A
96 104Right-handed alpha
Helix 4
4
A
107 128Right-handed alpha
Helix 5
5
A
177 183Right-handed alpha
Helix 6
6
A
187 206Right-handed alpha
Helix 7
7
A
214 225Right-handed alpha
Helix 8
8
A
234 245Right-handed alpha
Helix 9
9
A
254 261Right-handed alpha
Helix 10
10
A
261 266Right-handed alpha
Helix 11
11
A
280 287Right-handed alpha
Helix 12
12
B
44 49Right-handed alpha
Helix 13
13
B
52 66Right-handed alpha
Helix 14
14
B
96 104Right-handed alpha
Helix 15
15
B
107 129Right-handed alpha
Helix 16
16
B
136 138Right-handed 310
Helix 17
17
B
177 182Right-handed alpha
Helix 18
18
B
187 206Right-handed alpha
Helix 19
19
B
214 225Right-handed alpha
Helix 20
20
B
234 245Right-handed alpha
Helix 21
21
B
254 260Right-handed alpha
Helix 22
22
B
261 266Right-handed alpha
Helix 23
23
B
280 287Right-handed alpha
Helix 24
24
C
44 49Right-handed alpha
Helix 25
25
C
52 66Right-handed alpha
Helix 26
26
C
95 104Right-handed alpha
Helix 27
27
C
107 128Right-handed alpha
Helix 28
28
C
136 138Right-handed 310
Helix 29
29
C
177 183Right-handed alpha
Helix 30
30
C
187 206Right-handed alpha
Helix 31
31
C
214 225Right-handed alpha
Helix 32
32
C
234 245Right-handed alpha
Helix 33
33
C
254 260Right-handed alpha
Helix 34
34
C
261 266Right-handed alpha
Helix 35
35
C
280 287Right-handed alpha
Helix 36
36
D
31 34Right-handed 310
Helix 37
37
D
44 49Right-handed alpha
Helix 38
38
D
52 65Right-handed alpha
Helix 39
39
D
95 104Right-handed alpha
Helix 40
40
D
107 128Right-handed alpha
Helix 41
41
D
177 183Right-handed alpha
Helix 42
42
D
187 206Right-handed alpha
Helix 43
43
D
214 225Right-handed alpha
Helix 44
44
D
234 245Right-handed alpha
Helix 45
45
D
254 260Right-handed alpha
Helix 46
46
D
261 266Right-handed alpha
Helix 47
47
D
280 287Right-handed alpha
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There are 9 sheets in PDB entry 4D28. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, C,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
24 30anti-parallel
Strand 3
A
35 43anti-parallel
Strand 4
A
83 88anti-parallel
Strand 5
A
77 79anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
140 142anti-parallel
Strand 3
A
148 150anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
24 30anti-parallel
Strand 3
B
36 43anti-parallel
Strand 4
B
83 89anti-parallel
Strand 5
B
74 79anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 142first strand
Strand 2
B
148 150anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
24 29anti-parallel
Strand 3
C
36 43anti-parallel
Strand 4
C
83 89anti-parallel
Strand 5
C
74 79anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 142first strand
Strand 2
C
148 150anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 13first strand
Strand 2
D
28 29anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
24 26first strand
Strand 2
D
39 43anti-parallel
Strand 3
D
83 88anti-parallel
Strand 4
D
74 79anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 142first strand
Strand 2
D
148 150anti-parallel
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