Analysis of interatomic Contacts of Structural Units in PDB entry:
4D2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D2D entry

There are 2 chains in PDB entry 4D2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6LEU 478
B
 ALA 31ALA 33
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4D2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 46Right-handed alpha
Helix 2
2
A
52 81Right-handed alpha
Helix 3
3
A
83 104Right-handed alpha
Helix 4
4
A
107 109Right-handed 310
Helix 5
5
A
110 135Right-handed alpha
Helix 6
6
A
143 174Right-handed alpha
Helix 7
7
A
174 201Right-handed alpha
Helix 8
8
A
202 207Right-handed 310
Helix 9
9
A
216 242Right-handed alpha
Helix 10
10
A
245 271Right-handed alpha
Helix 11
11
A
276 285Right-handed alpha
Helix 12
12
A
285 301Right-handed alpha
Helix 13
13
A
304 314Right-handed alpha
Helix 14
14
A
320 325Right-handed 310
Helix 15
15
A
326 346Right-handed alpha
Helix 16
16
A
352 379Right-handed alpha
Helix 17
17
A
386 412Right-handed alpha
Helix 18
18
A
420 442Right-handed alpha
Helix 19
19
A
443 445Right-handed 310
Helix 20
20
A
449 478Right-handed alpha
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There are no sheets in PDB entry 4D2D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il