Analysis of interatomic Contacts of Structural Units in PDB entry:
4D2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D2J entry

There is 1 chain in PDB entry 4D2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 79GLY 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4D2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 94Right-handed alpha
Helix 2
2
A
106 117Right-handed alpha
Helix 3
3
A
122 135Right-handed alpha
Helix 4
4
A
138 141Right-handed 310
Helix 5
5
A
149 154Right-handed alpha
Helix 6
6
A
162 170Right-handed alpha
Helix 7
7
A
199 210Right-handed alpha
Helix 8
8
A
225 228Right-handed 310
Helix 9
9
A
231 252Right-handed alpha
Helix 10
10
A
269 291Right-handed alpha
Helix 11
11
A
294 298Right-handed 310
Helix 12
12
A
316 330Right-handed alpha
Helix 13
13
A
347 361Right-handed alpha
Helix 14
14
A
373 385Right-handed alpha
Helix 15
15
A
387 389Right-handed 310
Helix 16
16
A
390 410Right-handed alpha
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There are 2 sheets in PDB entry 4D2J. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
143 148parallel
Strand 3
A
173 177parallel
Strand 4
A
214 221parallel
Strand 5
A
255 262parallel
Strand 6
A
299 300parallel
Strand 7
A
338 341parallel
Strand 8
A
367 372parallel
Strand 9
A
99 103parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
192 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il