Analysis of interatomic Contacts of Structural Units in PDB entry:
4D2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D2K entry

There are 4 chains in PDB entry 4D2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7HIS 87
B
 GLY 8HIS 87
C
 GLY 8HIS 87
D
 GLY 8HIS 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4D2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 41Right-handed alpha
Helix 2
2
A
62 68Right-handed alpha
Helix 3
3
B
29 41Right-handed alpha
Helix 4
4
B
62 69Right-handed alpha
Helix 5
5
C
29 41Right-handed alpha
Helix 6
6
C
63 69Right-handed alpha
Helix 7
7
D
29 42Right-handed alpha
Helix 8
8
D
63 69Right-handed alpha
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There are 4 sheets in PDB entry 4D2K. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
10 16anti-parallel
Strand 3
A
74 78parallel
Strand 4
A
50 53anti-parallel
Strand 5
A
59 60anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
10 16anti-parallel
Strand 3
B
74 79parallel
Strand 4
B
49 53anti-parallel
Strand 5
B
59 60anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 27first strand
Strand 2
C
10 16anti-parallel
Strand 3
C
74 79parallel
Strand 4
C
49 53anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 27first strand
Strand 2
D
10 16anti-parallel
Strand 3
D
74 79parallel
Strand 4
D
49 53anti-parallel
Strand 5
D
59 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il