Analysis of interatomic Contacts of Structural Units in PDB entry:
4D43

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4D43 entry

There are 5 chains in PDB entry 4D43 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	LYS 256
B	ASN 3	LYS 256
C	ASN 3	LYS 256
D	ASN 3	LYS 256
E	ASN 3	ILE 246

There are117 helices in PDB entry 4D43. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	19	31	Right-handed alpha
Helix 2	2	A	41	53	Right-handed alpha
Helix 3	3	A	69	85	Right-handed alpha
Helix 4	4	A	98	102	Right-handed 310
Helix 5	5	A	105	109	Right-handed 310
Helix 6	6	A	110	122	Right-handed alpha
Helix 7	7	A	122	134	Right-handed alpha
Helix 8	8	A	147	151	Right-handed 310
Helix 9	9	A	157	179	Right-handed alpha
Helix 10	10	A	196	201	Right-handed 310
Helix 11	11	A	203	215	Right-handed alpha
Helix 12	12	A	222	235	Right-handed alpha
Helix 13	13	A	236	239	Right-handed 310
Helix 14	14	A	251	254	Right-handed 310
Helix 15	15	B	19	31	Right-handed alpha
Helix 16	16	B	41	52	Right-handed alpha
Helix 17	17	B	53	55	Right-handed 310
Helix 18	18	B	69	85	Right-handed alpha
Helix 19	19	B	98	103	Right-handed alpha
Helix 20	20	B	105	109	Right-handed 310
Helix 21	21	B	110	122	Right-handed alpha
Helix 22	22	B	122	134	Right-handed alpha
Helix 23	23	B	147	151	Right-handed 310
Helix 24	24	B	157	179	Right-handed alpha
Helix 25	25	B	195	201	Right-handed 310
Helix 26	26	B	203	215	Right-handed alpha
Helix 27	27	B	222	235	Right-handed alpha
Helix 28	28	B	236	239	Right-handed 310
Helix 29	29	B	251	254	Right-handed 310
Helix 30	30	C	19	31	Right-handed alpha
Helix 31	31	C	41	52	Right-handed alpha
Helix 32	32	C	53	55	Right-handed 310
Helix 33	33	C	69	85	Right-handed alpha
Helix 34	34	C	105	109	Right-handed 310
Helix 35	35	C	110	122	Right-handed alpha
Helix 36	36	C	122	134	Right-handed alpha
Helix 37	37	C	147	151	Right-handed 310
Helix 38	38	C	157	179	Right-handed alpha
Helix 39	39	C	196	201	Right-handed 310
Helix 40	40	C	203	215	Right-handed alpha
Helix 41	41	C	222	235	Right-handed alpha
Helix 42	42	C	236	239	Right-handed 310
Helix 43	43	C	251	253	Right-handed 310
Helix 44	44	D	19	31	Right-handed alpha
Helix 45	45	D	41	52	Right-handed alpha
Helix 46	46	D	53	55	Right-handed 310
Helix 47	47	D	69	85	Right-handed alpha
Helix 48	48	D	98	104	Right-handed alpha
Helix 49	49	D	105	109	Right-handed 310
Helix 50	50	D	110	122	Right-handed alpha
Helix 51	51	D	122	134	Right-handed alpha
Helix 52	52	D	147	151	Right-handed 310
Helix 53	53	D	157	179	Right-handed alpha
Helix 54	54	D	195	201	Right-handed 310
Helix 55	55	D	203	215	Right-handed alpha
Helix 56	56	D	222	235	Right-handed alpha
Helix 57	57	D	236	239	Right-handed 310
Helix 58	58	D	251	253	Right-handed 310
Helix 59	59	E	19	31	Right-handed alpha
Helix 60	60	E	41	52	Right-handed alpha
Helix 61	61	E	53	55	Right-handed 310
Helix 62	62	E	69	85	Right-handed alpha
Helix 63	63	E	105	109	Right-handed 310
Helix 64	64	E	110	122	Right-handed alpha
Helix 65	65	E	122	134	Right-handed alpha
Helix 66	66	E	147	151	Right-handed 310
Helix 67	67	E	157	179	Right-handed alpha
Helix 68	68	E	195	201	Right-handed 310
Helix 69	69	E	203	215	Right-handed alpha
Helix 70	70	E	222	235	Right-handed alpha
Helix 71	71	E	236	239	Right-handed 310
Helix 72	72	E	251	253	Right-handed 310
Helix 73	73	F	19	31	Right-handed alpha
Helix 74	74	F	41	52	Right-handed alpha
Helix 75	75	F	53	55	Right-handed 310
Helix 76	76	F	69	85	Right-handed alpha
Helix 77	77	F	98	103	Right-handed alpha
Helix 78	78	F	105	109	Right-handed 310
Helix 79	79	F	110	122	Right-handed alpha
Helix 80	80	F	122	134	Right-handed alpha
Helix 81	81	F	147	151	Right-handed 310
Helix 82	82	F	157	179	Right-handed alpha
Helix 83	83	F	195	201	Right-handed 310
Helix 84	84	F	203	215	Right-handed alpha
Helix 85	85	F	222	235	Right-handed alpha
Helix 86	86	F	236	239	Right-handed 310
Helix 87	87	F	251	253	Right-handed 310
Helix 88	88	G	19	31	Right-handed alpha
Helix 89	89	G	41	52	Right-handed alpha
Helix 90	90	G	53	55	Right-handed 310
Helix 91	91	G	69	85	Right-handed alpha
Helix 92	92	G	105	109	Right-handed 310
Helix 93	93	G	110	122	Right-handed alpha
Helix 94	94	G	122	134	Right-handed alpha
Helix 95	95	G	147	151	Right-handed 310
Helix 96	96	G	157	179	Right-handed alpha
Helix 97	97	G	196	201	Right-handed 310
Helix 98	98	G	203	215	Right-handed alpha
Helix 99	99	G	222	235	Right-handed alpha
Helix 100	100	G	236	239	Right-handed 310
Helix 101	101	G	251	254	Right-handed 310
Helix 102	102	H	19	31	Right-handed alpha
Helix 103	103	H	41	43	Right-handed 310
Helix 104	104	H	44	52	Right-handed alpha
Helix 105	105	H	53	55	Right-handed 310
Helix 106	106	H	69	85	Right-handed alpha
Helix 107	107	H	98	103	Right-handed 310
Helix 108	108	H	105	109	Right-handed 310
Helix 109	109	H	110	122	Right-handed alpha
Helix 110	110	H	122	134	Right-handed alpha
Helix 111	111	H	147	151	Right-handed 310
Helix 112	112	H	157	179	Right-handed alpha
Helix 113	113	H	196	201	Right-handed 310
Helix 114	114	H	203	215	Right-handed alpha
Helix 115	115	H	222	235	Right-handed alpha
Helix 116	116	H	236	239	Right-handed 310
Helix 117	117	H	251	253	Right-handed 310

There are 13 sheets in PDB entry 4D43. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, A, EA, EB, FA, FB, FC, GA, HA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	34	39	parallel
Strand 3	A	8	12	parallel
Strand 4	A	89	92	parallel
Strand 5	A	140	146	parallel
Strand 6	A	183	190	parallel
Strand 7	A	245	248	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	C	255	256	parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	34	39	parallel
Strand 3	B	8	12	parallel
Strand 4	B	89	92	parallel
Strand 5	B	140	146	parallel
Strand 6	B	183	190	parallel
Strand 7	B	245	248	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	D	255	256	parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	34	39	parallel
Strand 3	C	8	12	parallel
Strand 4	C	89	92	parallel
Strand 5	C	140	146	parallel
Strand 6	C	183	190	parallel
Strand 7	C	245	248	parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	34	39	parallel
Strand 3	D	8	12	parallel
Strand 4	D	89	92	parallel
Strand 5	D	140	146	parallel
Strand 6	D	183	190	parallel
Strand 7	D	245	248	parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	64	first strand
Strand 2	E	34	39	parallel
Strand 3	E	8	12	parallel
Strand 4	E	89	92	parallel
Strand 5	E	140	146	parallel
Strand 6	E	183	190	parallel
Strand 7	E	245	248	parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	256	first strand
Strand 2	G	153	154	parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	64	first strand
Strand 2	F	34	39	parallel
Strand 3	F	8	12	parallel
Strand 4	F	89	92	parallel
Strand 5	F	140	146	parallel
Strand 6	F	183	190	parallel
Strand 7	F	245	248	parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	154	first strand
Strand 2	H	255	256	parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	255	256	first strand
Strand 2	H	153	154	parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	64	first strand
Strand 2	G	34	39	parallel
Strand 3	G	8	12	parallel
Strand 4	G	89	92	parallel
Strand 5	G	140	146	parallel
Strand 6	G	183	190	parallel
Strand 7	G	245	248	parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	64	first strand
Strand 2	H	34	39	parallel
Strand 3	H	8	12	parallel
Strand 4	H	89	92	parallel
Strand 5	H	140	146	parallel
Strand 6	H	183	190	parallel
Strand 7	H	245	248	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4D43

Analysis of interatomic Contacts of Structural Units in PDB entry:
4D43