Analysis of interatomic Contacts of Structural Units in PDB entry:
4D4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D4B entry

There are 2 chains in PDB entry 4D4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39GLY 374
B
 HIS 19GLY 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4D4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 52Right-handed alpha
Helix 2
2
A
71 89Right-handed alpha
Helix 3
3
A
91 114Right-handed alpha
Helix 4
4
A
116 120Right-handed 310
Helix 5
5
A
122 141Right-handed alpha
Helix 6
6
A
142 161Right-handed alpha
Helix 7
7
A
164 168Right-handed 310
Helix 8
8
A
182 200Right-handed alpha
Helix 9
9
A
201 219Right-handed alpha
Helix 10
10
A
241 260Right-handed alpha
Helix 11
11
A
261 279Right-handed alpha
Helix 12
12
A
298 317Right-handed alpha
Helix 13
13
A
319 339Right-handed alpha
Helix 14
14
A
361 372Right-handed alpha
Helix 15
15
B
39 52Right-handed alpha
Helix 16
16
B
71 89Right-handed alpha
Helix 17
17
B
91 114Right-handed alpha
Helix 18
18
B
122 141Right-handed alpha
Helix 19
19
B
142 161Right-handed alpha
Helix 20
20
B
182 200Right-handed alpha
Helix 21
21
B
201 220Right-handed alpha
Helix 22
22
B
241 260Right-handed alpha
Helix 23
23
B
261 279Right-handed alpha
Helix 24
24
B
298 317Right-handed alpha
Helix 25
25
B
319 340Right-handed alpha
Helix 26
26
B
361 372Right-handed alpha
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There are 4 sheets in PDB entry 4D4B. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
59 60anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
229 231anti-parallel
Strand 3
A
235 236anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
59 60anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
229 231anti-parallel
Strand 3
B
235 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il