Analysis of interatomic Contacts of Structural Units in PDB entry:
4D4E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D4E entry

There are 2 chains in PDB entry 4D4E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12SER 250
B
 GLU 12SER 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 4D4E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 20Right-handed alpha
Helix 2
2
A
24 40Right-handed alpha
Helix 3
3
A
42 52Right-handed alpha
Helix 4
4
A
54 61Right-handed alpha
Helix 5
5
A
62 64Right-handed 310
Helix 6
6
A
66 81Right-handed alpha
Helix 7
7
A
84 94Right-handed alpha
Helix 8
8
A
96 103Right-handed alpha
Helix 9
9
A
104 106Right-handed 310
Helix 10
10
A
108 124Right-handed alpha
Helix 11
11
A
126 136Right-handed alpha
Helix 12
12
A
138 146Right-handed alpha
Helix 13
13
A
150 166Right-handed alpha
Helix 14
14
A
168 178Right-handed alpha
Helix 15
15
A
180 187Right-handed alpha
Helix 16
16
A
188 190Right-handed 310
Helix 17
17
A
192 208Right-handed alpha
Helix 18
18
A
210 221Right-handed alpha
Helix 19
19
A
221 229Right-handed alpha
Helix 20
20
A
230 232Right-handed 310
Helix 21
21
A
234 248Right-handed alpha
Helix 22
22
B
12 19Right-handed alpha
Helix 23
23
B
20 22Right-handed 310
Helix 24
24
B
24 40Right-handed alpha
Helix 25
25
B
42 52Right-handed alpha
Helix 26
26
B
54 62Right-handed alpha
Helix 27
27
B
66 82Right-handed alpha
Helix 28
28
B
84 94Right-handed alpha
Helix 29
29
B
96 103Right-handed alpha
Helix 30
30
B
108 124Right-handed alpha
Helix 31
31
B
126 136Right-handed alpha
Helix 32
32
B
138 146Right-handed alpha
Helix 33
33
B
150 166Right-handed alpha
Helix 34
34
B
168 178Right-handed alpha
Helix 35
35
B
180 187Right-handed alpha
Helix 36
36
B
188 190Right-handed 310
Helix 37
37
B
192 209Right-handed alpha
Helix 38
38
B
210 219Right-handed alpha
Helix 39
39
B
221 228Right-handed alpha
Helix 40
40
B
229 232Right-handed 310
Helix 41
41
B
234 247Right-handed alpha
Back to top of page
There are no sheets in PDB entry 4D4E
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il