Analysis of interatomic Contacts of Structural Units in PDB entry:
4D4T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D4T entry

There is 1 chain in PDB entry 4D4T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1MET 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4D4T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 53Right-handed alpha
Helix 2
2
A
78 82Right-handed 310
Helix 3
3
A
92 96Right-handed alpha
Helix 4
4
A
122 124Right-handed 310
Helix 5
5
A
129 134Right-handed alpha
Helix 6
6
A
182 191Right-handed alpha
Helix 7
7
A
210 214Right-handed 310
Helix 8
8
A
227 231Right-handed 310
Helix 9
9
A
234 241Right-handed alpha
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There are 7 sheets in PDB entry 4D4T. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
107 120parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
14 24parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
14 24anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
67 75parallel
Strand 3
A
56 64anti-parallel
Strand 4
A
107 120anti-parallel
Strand 5
A
14 24anti-parallel
Strand 6
A
31 35parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
67 75parallel
Strand 3
A
56 64anti-parallel
Strand 4
A
107 120anti-parallel
Strand 5
A
2 7parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
220 225parallel
Strand 3
A
201 206anti-parallel
Strand 4
A
193 195anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 167first strand
Strand 2
A
141 151anti-parallel
Strand 3
A
242 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il