Analysis of interatomic Contacts of Structural Units in PDB entry:
4D5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D5E entry

There are 2 chains in PDB entry 4D5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LEU 587
B
 ALA 2LYS 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 4D5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 17Right-handed alpha
Helix 2
2
A
27 29Right-handed 310
Helix 3
3
A
30 39Right-handed alpha
Helix 4
4
A
40 44Right-handed 310
Helix 5
5
A
51 67Right-handed alpha
Helix 6
6
A
78 82Right-handed 310
Helix 7
7
A
83 93Right-handed alpha
Helix 8
8
A
105 109Right-handed 310
Helix 9
9
A
119 124Right-handed 310
Helix 10
10
A
135 137Right-handed 310
Helix 11
11
A
138 151Right-handed alpha
Helix 12
12
A
164 169Right-handed alpha
Helix 13
13
A
191 205Right-handed alpha
Helix 14
14
A
213 220Right-handed alpha
Helix 15
15
A
221 233Right-handed alpha
Helix 16
16
A
262 272Right-handed alpha
Helix 17
17
A
304 308Right-handed 310
Helix 18
18
A
321 333Right-handed alpha
Helix 19
19
A
334 336Right-handed 310
Helix 20
20
A
343 347Right-handed 310
Helix 21
21
A
349 369Right-handed alpha
Helix 22
22
A
376 387Right-handed alpha
Helix 23
23
A
401 409Right-handed alpha
Helix 24
24
A
428 440Right-handed alpha
Helix 25
25
A
451 455Right-handed alpha
Helix 26
26
A
457 459Right-handed 310
Helix 27
27
A
460 467Right-handed alpha
Helix 28
28
A
481 493Right-handed alpha
Helix 29
29
A
504 512Right-handed alpha
Helix 30
30
A
524 536Right-handed alpha
Helix 31
31
A
581 587Right-handed 310
Helix 32
32
B
6 17Right-handed alpha
Helix 33
33
B
27 29Right-handed 310
Helix 34
34
B
30 39Right-handed alpha
Helix 35
35
B
40 44Right-handed 310
Helix 36
36
B
51 67Right-handed alpha
Helix 37
37
B
78 82Right-handed 310
Helix 38
38
B
83 93Right-handed alpha
Helix 39
39
B
105 109Right-handed 310
Helix 40
40
B
119 124Right-handed 310
Helix 41
41
B
135 137Right-handed 310
Helix 42
42
B
138 151Right-handed alpha
Helix 43
43
B
164 169Right-handed alpha
Helix 44
44
B
191 205Right-handed alpha
Helix 45
45
B
213 220Right-handed alpha
Helix 46
46
B
221 233Right-handed alpha
Helix 47
47
B
262 272Right-handed alpha
Helix 48
48
B
304 308Right-handed 310
Helix 49
49
B
321 333Right-handed alpha
Helix 50
50
B
334 336Right-handed 310
Helix 51
51
B
343 347Right-handed 310
Helix 52
52
B
349 368Right-handed alpha
Helix 53
53
B
376 387Right-handed alpha
Helix 54
54
B
401 409Right-handed alpha
Helix 55
55
B
428 440Right-handed alpha
Helix 56
56
B
451 455Right-handed alpha
Helix 57
57
B
457 459Right-handed 310
Helix 58
58
B
460 467Right-handed alpha
Helix 59
59
B
481 493Right-handed alpha
Helix 60
60
B
504 512Right-handed alpha
Helix 61
61
B
524 536Right-handed alpha
Helix 62
62
B
581 587Right-handed 310
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There are 8 sheets in PDB entry 4D5E. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
170 172anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
21 25parallel
Strand 3
A
71 76parallel
Strand 4
A
97 103parallel
Strand 5
A
157 163parallel
Strand 6
A
129 132parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
236 238parallel
Strand 3
A
208 212parallel
Strand 4
A
274 278parallel
Strand 5
A
298 302parallel
Strand 6
A
316 319parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
393 396parallel
Strand 3
A
445 450parallel
Strand 4
A
472 477parallel
Strand 5
A
539 544parallel
Strand 6
A
515 518parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
170 172anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
71 76parallel
Strand 3
B
97 103parallel
Strand 4
B
157 163parallel
Strand 5
B
129 132parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 256first strand
Strand 2
B
236 238parallel
Strand 3
B
208 212parallel
Strand 4
B
274 278parallel
Strand 5
B
298 302parallel
Strand 6
B
316 319parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 418first strand
Strand 2
B
393 396parallel
Strand 3
B
445 450parallel
Strand 4
B
472 477parallel
Strand 5
B
539 544parallel
Strand 6
B
515 518parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il