Analysis of interatomic Contacts of Structural Units in PDB entry:
4D5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D5T entry

There are 8 chains in PDB entry 4D5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 13GLY 163
B
 VAL 13GLY 163
C
 VAL 13LEU 162
D
 VAL 13GLY 163
E
 VAL 13GLY 163
F
 VAL 13LEU 162
G
 VAL 13LEU 162
H
 VAL 13ILE 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 4D5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 35Right-handed alpha
Helix 2
2
A
36 38Right-handed 310
Helix 3
3
A
39 52Right-handed alpha
Helix 4
4
A
59 73Right-handed alpha
Helix 5
5
A
74 84Right-handed alpha
Helix 6
6
A
86 99Right-handed alpha
Helix 7
7
A
100 103Right-handed 310
Helix 8
8
A
105 121Right-handed alpha
Helix 9
9
A
122 138Right-handed alpha
Helix 10
10
A
142 162Right-handed alpha
Helix 11
11
B
19 35Right-handed alpha
Helix 12
12
B
36 38Right-handed 310
Helix 13
13
B
39 52Right-handed alpha
Helix 14
14
B
59 73Right-handed alpha
Helix 15
15
B
74 84Right-handed alpha
Helix 16
16
B
86 99Right-handed alpha
Helix 17
17
B
100 103Right-handed 310
Helix 18
18
B
105 121Right-handed alpha
Helix 19
19
B
122 138Right-handed alpha
Helix 20
20
B
142 162Right-handed alpha
Helix 21
21
C
19 35Right-handed alpha
Helix 22
22
C
36 38Right-handed 310
Helix 23
23
C
39 52Right-handed alpha
Helix 24
24
C
59 73Right-handed alpha
Helix 25
25
C
74 84Right-handed alpha
Helix 26
26
C
86 99Right-handed alpha
Helix 27
27
C
100 103Right-handed 310
Helix 28
28
C
105 121Right-handed alpha
Helix 29
29
C
122 138Right-handed alpha
Helix 30
30
C
142 162Right-handed alpha
Helix 31
31
D
19 35Right-handed alpha
Helix 32
32
D
36 38Right-handed 310
Helix 33
33
D
39 52Right-handed alpha
Helix 34
34
D
59 73Right-handed alpha
Helix 35
35
D
74 84Right-handed alpha
Helix 36
36
D
86 99Right-handed alpha
Helix 37
37
D
100 103Right-handed 310
Helix 38
38
D
105 121Right-handed alpha
Helix 39
39
D
122 138Right-handed alpha
Helix 40
40
D
142 162Right-handed alpha
Helix 41
41
E
19 35Right-handed alpha
Helix 42
42
E
36 38Right-handed 310
Helix 43
43
E
39 52Right-handed alpha
Helix 44
44
E
59 73Right-handed alpha
Helix 45
45
E
74 84Right-handed alpha
Helix 46
46
E
86 99Right-handed alpha
Helix 47
47
E
100 103Right-handed 310
Helix 48
48
E
105 121Right-handed alpha
Helix 49
49
E
122 138Right-handed alpha
Helix 50
50
E
142 162Right-handed alpha
Helix 51
51
F
19 35Right-handed alpha
Helix 52
52
F
36 38Right-handed 310
Helix 53
53
F
39 52Right-handed alpha
Helix 54
54
F
59 73Right-handed alpha
Helix 55
55
F
74 84Right-handed alpha
Helix 56
56
F
86 99Right-handed alpha
Helix 57
57
F
100 103Right-handed 310
Helix 58
58
F
105 121Right-handed alpha
Helix 59
59
F
122 138Right-handed alpha
Helix 60
60
F
142 162Right-handed alpha
Helix 61
61
G
19 35Right-handed alpha
Helix 62
62
G
36 38Right-handed 310
Helix 63
63
G
39 52Right-handed alpha
Helix 64
64
G
59 73Right-handed alpha
Helix 65
65
G
74 84Right-handed alpha
Helix 66
66
G
86 99Right-handed alpha
Helix 67
67
G
100 103Right-handed 310
Helix 68
68
G
105 121Right-handed alpha
Helix 69
69
G
122 138Right-handed alpha
Helix 70
70
G
142 162Right-handed alpha
Helix 71
71
H
19 35Right-handed alpha
Helix 72
72
H
36 38Right-handed 310
Helix 73
73
H
39 52Right-handed alpha
Helix 74
74
H
59 73Right-handed alpha
Helix 75
75
H
74 84Right-handed alpha
Helix 76
76
H
86 99Right-handed alpha
Helix 77
77
H
100 103Right-handed 310
Helix 78
78
H
105 121Right-handed alpha
Helix 79
79
H
122 138Right-handed alpha
Helix 80
80
H
142 162Right-handed alpha
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There are no sheets in PDB entry 4D5T
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