Analysis of interatomic Contacts of Structural Units in PDB entry:
4D60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4D60 entry

There are 16 chains in PDB entry 4D60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	SER 164
B	GLU 4	SER 164
C	GLU 4	SER 164
D	GLU 4	SER 164
E	GLU 4	SER 164
F	GLU 4	SER 164
G	GLU 4	SER 164
H	GLU 4	SER 164
I	GLU 4	SER 164
J	GLU 4	SER 164
K	TYR 5	SER 164
L	GLU 4	SER 164
M	GLU 4	SER 164
N	GLU 4	SER 164
O	GLU 4	SER 164
P	GLU 4	SER 164

There are 64 helices in PDB entry 4D60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	15	Right-handed alpha
Helix 2	2	A	72	81	Right-handed alpha
Helix 3	3	A	141	143	Right-handed 310
Helix 4	4	A	145	163	Right-handed alpha
Helix 5	5	B	6	15	Right-handed alpha
Helix 6	6	B	71	81	Right-handed alpha
Helix 7	7	B	141	143	Right-handed 310
Helix 8	8	B	145	163	Right-handed alpha
Helix 9	9	C	6	15	Right-handed alpha
Helix 10	10	C	72	81	Right-handed alpha
Helix 11	11	C	141	143	Right-handed 310
Helix 12	12	C	145	163	Right-handed alpha
Helix 13	13	D	6	15	Right-handed alpha
Helix 14	14	D	70	81	Right-handed alpha
Helix 15	15	D	145	163	Right-handed alpha
Helix 16	16	E	6	15	Right-handed alpha
Helix 17	17	E	50	55	Right-handed alpha
Helix 18	18	E	72	81	Right-handed alpha
Helix 19	19	E	141	143	Right-handed 310
Helix 20	20	E	145	163	Right-handed alpha
Helix 21	21	F	6	15	Right-handed alpha
Helix 22	22	F	50	55	Right-handed alpha
Helix 23	23	F	70	81	Right-handed alpha
Helix 24	24	F	145	163	Right-handed alpha
Helix 25	25	G	6	15	Right-handed alpha
Helix 26	26	G	70	81	Right-handed alpha
Helix 27	27	G	141	143	Right-handed 310
Helix 28	28	G	145	163	Right-handed alpha
Helix 29	29	H	6	15	Right-handed alpha
Helix 30	30	H	70	82	Right-handed alpha
Helix 31	31	H	141	143	Right-handed 310
Helix 32	32	H	145	163	Right-handed alpha
Helix 33	33	I	6	15	Right-handed alpha
Helix 34	34	I	70	81	Right-handed alpha
Helix 35	35	I	141	143	Right-handed 310
Helix 36	36	I	145	163	Right-handed alpha
Helix 37	37	J	6	15	Right-handed alpha
Helix 38	38	J	72	81	Right-handed alpha
Helix 39	39	J	141	143	Right-handed 310
Helix 40	40	J	145	163	Right-handed alpha
Helix 41	41	K	6	15	Right-handed alpha
Helix 42	42	K	70	82	Right-handed alpha
Helix 43	43	K	141	143	Right-handed 310
Helix 44	44	K	145	163	Right-handed alpha
Helix 45	45	L	6	15	Right-handed alpha
Helix 46	46	L	72	81	Right-handed alpha
Helix 47	47	L	141	143	Right-handed 310
Helix 48	48	L	145	163	Right-handed alpha
Helix 49	49	M	6	15	Right-handed alpha
Helix 50	50	M	70	81	Right-handed alpha
Helix 51	51	M	141	143	Right-handed 310
Helix 52	52	M	145	163	Right-handed alpha
Helix 53	53	N	6	15	Right-handed alpha
Helix 54	54	N	70	82	Right-handed alpha
Helix 55	55	N	141	143	Right-handed 310
Helix 56	56	N	145	163	Right-handed alpha
Helix 57	57	O	6	15	Right-handed alpha
Helix 58	58	O	72	81	Right-handed alpha
Helix 59	59	O	141	143	Right-handed 310
Helix 60	60	O	145	163	Right-handed alpha
Helix 61	61	P	6	15	Right-handed alpha
Helix 62	62	P	72	81	Right-handed alpha
Helix 63	63	P	141	143	Right-handed 310
Helix 64	64	P	145	163	Right-handed alpha

There are 24 sheets in PDB entry 4D60. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, EA, EB, EC, FA, FB, FC, GA, GB, GC, JA, JB, JC, OA, OB, OC,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	39	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	I	132	139	anti-parallel
Strand 4	I	121	128	anti-parallel
Strand 5	I	109	118	anti-parallel
Strand 6	I	93	106	anti-parallel
Strand 7	I	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	69	first strand
Strand 2	I	59	69	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	93	106	anti-parallel
Strand 3	A	109	118	anti-parallel
Strand 4	A	121	128	anti-parallel
Strand 5	A	132	139	anti-parallel
Strand 6	I	23	28	anti-parallel
Strand 7	I	34	39	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	N	132	139	anti-parallel
Strand 4	N	121	128	anti-parallel
Strand 5	N	109	118	anti-parallel
Strand 6	N	93	106	anti-parallel
Strand 7	N	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	69	first strand
Strand 2	N	59	69	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	93	106	anti-parallel
Strand 3	B	109	118	anti-parallel
Strand 4	B	121	128	anti-parallel
Strand 5	B	132	139	anti-parallel
Strand 6	N	23	28	anti-parallel
Strand 7	N	34	39	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	39	first strand
Strand 2	C	23	28	anti-parallel
Strand 3	D	132	139	anti-parallel
Strand 4	D	121	128	anti-parallel
Strand 5	D	109	118	anti-parallel
Strand 6	D	93	106	anti-parallel
Strand 7	D	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	69	first strand
Strand 2	D	59	69	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	93	106	anti-parallel
Strand 3	C	109	118	anti-parallel
Strand 4	C	121	128	anti-parallel
Strand 5	C	132	139	anti-parallel
Strand 6	D	23	28	anti-parallel
Strand 7	D	34	38	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	39	first strand
Strand 2	E	23	28	anti-parallel
Strand 3	K	132	139	anti-parallel
Strand 4	K	121	128	anti-parallel
Strand 5	K	109	118	anti-parallel
Strand 6	K	93	106	anti-parallel
Strand 7	K	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	69	first strand
Strand 2	K	59	69	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	90	first strand
Strand 2	E	93	106	anti-parallel
Strand 3	E	109	118	anti-parallel
Strand 4	E	121	128	anti-parallel
Strand 5	E	132	139	anti-parallel
Strand 6	K	23	28	anti-parallel
Strand 7	K	34	39	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	39	first strand
Strand 2	F	23	28	anti-parallel
Strand 3	H	132	139	anti-parallel
Strand 4	H	121	128	anti-parallel
Strand 5	H	109	118	anti-parallel
Strand 6	H	93	106	anti-parallel
Strand 7	H	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	69	first strand
Strand 2	H	59	69	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	90	first strand
Strand 2	F	93	106	anti-parallel
Strand 3	F	109	118	anti-parallel
Strand 4	F	121	128	anti-parallel
Strand 5	F	132	139	anti-parallel
Strand 6	H	23	28	anti-parallel
Strand 7	H	34	39	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	39	first strand
Strand 2	G	23	28	anti-parallel
Strand 3	M	132	139	anti-parallel
Strand 4	M	121	128	anti-parallel
Strand 5	M	109	118	anti-parallel
Strand 6	M	93	106	anti-parallel
Strand 7	M	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	68	first strand
Strand 2	M	60	69	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	90	first strand
Strand 2	G	93	106	anti-parallel
Strand 3	G	109	118	anti-parallel
Strand 4	G	121	128	anti-parallel
Strand 5	G	132	139	anti-parallel
Strand 6	M	23	28	anti-parallel
Strand 7	M	34	39	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	39	first strand
Strand 2	J	23	28	anti-parallel
Strand 3	L	132	139	anti-parallel
Strand 4	L	121	128	anti-parallel
Strand 5	L	109	118	anti-parallel
Strand 6	L	93	106	anti-parallel
Strand 7	L	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	59	69	first strand
Strand 2	L	59	69	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in JC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	90	first strand
Strand 2	J	93	106	anti-parallel
Strand 3	J	109	118	anti-parallel
Strand 4	J	121	128	anti-parallel
Strand 5	J	132	139	anti-parallel
Strand 6	L	23	28	anti-parallel
Strand 7	L	34	39	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	34	39	first strand
Strand 2	O	23	28	anti-parallel
Strand 3	P	132	139	anti-parallel
Strand 4	P	121	128	anti-parallel
Strand 5	P	109	118	anti-parallel
Strand 6	P	93	106	anti-parallel
Strand 7	P	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in OB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	59	68	first strand
Strand 2	P	60	69	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in OC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	88	90	first strand
Strand 2	O	93	106	anti-parallel
Strand 3	O	109	118	anti-parallel
Strand 4	O	121	128	anti-parallel
Strand 5	O	132	139	anti-parallel
Strand 6	P	23	28	anti-parallel
Strand 7	P	34	39	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4D60

Analysis of interatomic Contacts of Structural Units in PDB entry:
4D60