Analysis of interatomic Contacts of Structural Units in PDB entry:
4D65


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D65 entry

There are 4 chains in PDB entry 4D65 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 343
B
 ALA 1PHE 343
C
 ALA 1PHE 343
D
 ALA 1GLU 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4D65. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 29Right-handed 310
Helix 2
2
A
96 103Right-handed alpha
Helix 3
3
A
104 106Right-handed 310
Helix 4
4
A
137 141Right-handed 310
Helix 5
5
A
165 169Right-handed 310
Helix 6
6
A
202 207Right-handed alpha
Helix 7
7
A
283 287Right-handed 310
Helix 8
8
A
321 328Right-handed alpha
Helix 9
9
B
25 29Right-handed 310
Helix 10
10
B
97 103Right-handed alpha
Helix 11
11
B
104 106Right-handed 310
Helix 12
12
B
137 141Right-handed 310
Helix 13
13
B
165 169Right-handed 310
Helix 14
14
B
202 207Right-handed alpha
Helix 15
15
B
283 287Right-handed 310
Helix 16
16
B
321 328Right-handed alpha
Helix 17
17
C
25 29Right-handed 310
Helix 18
18
C
96 103Right-handed alpha
Helix 19
19
C
104 106Right-handed 310
Helix 20
20
C
137 141Right-handed 310
Helix 21
21
C
165 169Right-handed 310
Helix 22
22
C
202 207Right-handed alpha
Helix 23
23
C
283 287Right-handed 310
Helix 24
24
C
321 328Right-handed alpha
Helix 25
25
D
25 29Right-handed 310
Helix 26
26
D
97 103Right-handed alpha
Helix 27
27
D
137 141Right-handed 310
Helix 28
28
D
165 169Right-handed 310
Helix 29
29
D
202 207Right-handed alpha
Helix 30
30
D
283 287Right-handed 310
Helix 31
31
D
321 328Right-handed alpha
Helix 32
32
E
26 29Right-handed 310
Helix 33
33
E
96 103Right-handed alpha
Helix 34
34
E
104 106Right-handed 310
Helix 35
35
E
137 141Right-handed 310
Helix 36
36
E
165 169Right-handed 310
Helix 37
37
E
202 207Right-handed alpha
Helix 38
38
E
283 287Right-handed 310
Helix 39
39
E
321 328Right-handed alpha
Helix 40
40
F
25 29Right-handed 310
Helix 41
41
F
96 103Right-handed alpha
Helix 42
42
F
104 106Right-handed 310
Helix 43
43
F
137 141Right-handed 310
Helix 44
44
F
165 169Right-handed 310
Helix 45
45
F
202 207Right-handed alpha
Helix 46
46
F
283 287Right-handed 310
Helix 47
47
F
321 328Right-handed alpha
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There are 18 sheets in PDB entry 4D65. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 24anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
9 24parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
249 250anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
9 23anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
9 23parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 242first strand
Strand 2
B
249 250anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
9 23anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 33first strand
Strand 2
C
9 23parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 242first strand
Strand 2
C
249 250anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 6first strand
Strand 2
D
9 23anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 33first strand
Strand 2
D
9 23parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
241 242first strand
Strand 2
D
249 250anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 6first strand
Strand 2
E
9 24anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
32 33first strand
Strand 2
E
9 24parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
241 242first strand
Strand 2
E
249 250anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2 6first strand
Strand 2
F
9 23anti-parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
32 33first strand
Strand 2
F
9 23parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
241 242first strand
Strand 2
F
249 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il