Analysis of interatomic Contacts of Structural Units in PDB entry:
4D6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D6D entry

There is 1 chain in PDB entry 4D6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 421HIS 1006
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4D6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
442 447Right-handed alpha
Helix 2
2
A
458 466Right-handed alpha
Helix 3
3
A
470 472Right-handed 310
Helix 4
4
A
488 504Right-handed alpha
Helix 5
5
A
525 527Right-handed 310
Helix 6
6
A
531 536Right-handed 310
Helix 7
7
A
537 548Right-handed alpha
Helix 8
8
A
566 581Right-handed alpha
Helix 9
9
A
591 593Right-handed 310
Helix 10
10
A
594 600Right-handed alpha
Helix 11
11
A
606 616Right-handed alpha
Helix 12
12
A
627 631Right-handed 310
Helix 13
13
A
632 646Right-handed alpha
Helix 14
14
A
659 664Right-handed alpha
Helix 15
15
A
679 684Right-handed alpha
Helix 16
16
A
688 701Right-handed alpha
Helix 17
17
A
711 716Right-handed alpha
Helix 18
18
A
723 729Right-handed alpha
Helix 19
19
A
729 740Right-handed alpha
Helix 20
20
A
744 752Right-handed alpha
Helix 21
21
A
759 763Right-handed 310
Helix 22
22
A
764 770Right-handed 310
Helix 23
23
A
799 805Right-handed alpha
Helix 24
24
A
818 822Right-handed 310
Helix 25
25
A
823 835Right-handed alpha
Helix 26
26
A
906 911Right-handed 310
Helix 27
27
A
915 921Right-handed alpha
Helix 28
28
A
926 938Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4D6D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 440first strand
Strand 2
A
706 710parallel
Strand 3
A
651 657parallel
Strand 4
A
619 624parallel
Strand 5
A
584 588parallel
Strand 6
A
551 557parallel
Strand 7
A
517 523parallel
Strand 8
A
474 479parallel
Strand 9
A
434 440parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 718first strand
Strand 2
A
721 722anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
792 793first strand
Strand 2
A
754 757parallel
Strand 3
A
812 815parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
844 848first strand
Strand 2
A
851 855anti-parallel
Strand 3
A
885 891anti-parallel
Strand 4
A
894 900anti-parallel
Strand 5
A
996 1002anti-parallel
Strand 6
A
962 968anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
865 871first strand
Strand 2
A
874 880anti-parallel
Strand 3
A
948 955anti-parallel
Strand 4
A
986 993anti-parallel
Strand 5
A
977 981anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il