Analysis of interatomic Contacts of Structural Units in PDB entry:
4D6W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4D6W entry

There are 3 chains in PDB entry 4D6W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 1	PRO 415
B	TYR 1	HIS 416
C	TYR 1	GLN 413

There are 27 helices in PDB entry 4D6W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	51	54	Right-handed 310
Helix 2	2	A	88	100	Right-handed alpha
Helix 3	3	A	250	253	Right-handed 310
Helix 4	4	A	266	268	Right-handed 310
Helix 5	5	A	269	296	Right-handed alpha
Helix 6	6	A	301	307	Right-handed alpha
Helix 7	7	A	374	376	Right-handed 310
Helix 8	8	A	387	403	Right-handed alpha
Helix 9	9	B	29	33	Right-handed 310
Helix 10	10	B	51	54	Right-handed 310
Helix 11	11	B	88	100	Right-handed alpha
Helix 12	12	B	215	217	Right-handed 310
Helix 13	13	B	250	253	Right-handed 310
Helix 14	14	B	266	268	Right-handed 310
Helix 15	15	B	269	296	Right-handed alpha
Helix 16	16	B	301	309	Right-handed alpha
Helix 17	17	B	374	376	Right-handed 310
Helix 18	18	B	387	405	Right-handed alpha
Helix 19	19	C	51	54	Right-handed 310
Helix 20	20	C	88	100	Right-handed alpha
Helix 21	21	C	215	217	Right-handed 310
Helix 22	22	C	250	253	Right-handed 310
Helix 23	23	C	266	268	Right-handed 310
Helix 24	24	C	269	296	Right-handed alpha
Helix 25	25	C	301	307	Right-handed alpha
Helix 26	26	C	374	376	Right-handed 310
Helix 27	27	C	387	405	Right-handed alpha

There are 42 sheets in PDB entry 4D6W. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	325	336	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	325	336	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	322	first strand
Strand 2	A	325	336	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	49	first strand
Strand 2	A	180	192	anti-parallel
Strand 3	A	203	206	anti-parallel
Strand 4	A	209	213	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	84	first strand
Strand 2	A	56	69	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	131	first strand
Strand 2	A	56	69	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	165	169	anti-parallel
Strand 3	A	56	69	anti-parallel
Strand 4	A	77	84	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	165	169	anti-parallel
Strand 3	A	56	69	anti-parallel
Strand 4	A	120	131	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	137	first strand
Strand 2	A	142	144	anti-parallel
Strand 3	A	152	153	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	225	229	anti-parallel
Strand 3	A	235	237	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	247	248	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	343	first strand
Strand 2	A	384	385	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	349	first strand
Strand 2	A	357	359	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	367	first strand
Strand 2	A	370	372	anti-parallel
Strand 3	A	378	379	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	B	325	338	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	325	338	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	322	first strand
Strand 2	B	325	338	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	359	first strand
Strand 2	B	347	350	anti-parallel
Strand 3	B	325	338	anti-parallel
Strand 4	B	314	322	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	359	first strand
Strand 2	B	347	350	anti-parallel
Strand 3	B	325	338	anti-parallel
Strand 4	B	14	16	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	49	first strand
Strand 2	B	180	192	anti-parallel
Strand 3	B	202	205	anti-parallel
Strand 4	B	212	213	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	85	first strand
Strand 2	B	56	69	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	131	first strand
Strand 2	B	56	69	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	165	169	anti-parallel
Strand 3	B	56	69	anti-parallel
Strand 4	B	77	85	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	165	169	anti-parallel
Strand 3	B	56	69	anti-parallel
Strand 4	B	120	131	anti-parallel

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There are 3 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	137	first strand
Strand 2	B	142	144	anti-parallel
Strand 3	B	152	153	anti-parallel

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There are 3 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	227	229	anti-parallel
Strand 3	B	235	237	anti-parallel

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There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	247	248	anti-parallel

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There are 5 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	343	first strand
Strand 2	B	383	385	anti-parallel
Strand 3	B	378	380	anti-parallel
Strand 4	B	370	372	anti-parallel
Strand 5	B	365	367	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	325	338	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	325	338	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	322	first strand
Strand 2	C	325	338	anti-parallel

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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	359	first strand
Strand 2	C	347	350	anti-parallel
Strand 3	C	325	338	anti-parallel
Strand 4	C	314	322	anti-parallel

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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	359	first strand
Strand 2	C	347	350	anti-parallel
Strand 3	C	325	338	anti-parallel
Strand 4	C	15	16	anti-parallel

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There are 4 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	49	first strand
Strand 2	C	180	192	anti-parallel
Strand 3	C	203	205	anti-parallel
Strand 4	C	212	213	anti-parallel

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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	85	first strand
Strand 2	C	56	69	anti-parallel

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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	131	first strand
Strand 2	C	56	69	anti-parallel

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There are 4 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	165	169	anti-parallel
Strand 3	C	56	69	anti-parallel
Strand 4	C	77	85	anti-parallel

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There are 4 strands in CJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	165	169	anti-parallel
Strand 3	C	56	69	anti-parallel
Strand 4	C	120	131	anti-parallel

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There are 3 strands in CK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	137	first strand
Strand 2	C	142	144	anti-parallel
Strand 3	C	152	153	anti-parallel

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There are 3 strands in CL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	227	229	anti-parallel
Strand 3	C	235	237	anti-parallel

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There are 2 strands in CM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	247	248	anti-parallel

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There are 5 strands in CN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	343	first strand
Strand 2	C	383	385	anti-parallel
Strand 3	C	378	380	anti-parallel
Strand 4	C	371	372	anti-parallel
Strand 5	C	365	366	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4D6W

Analysis of interatomic Contacts of Structural Units in PDB entry:
4D6W