Analysis of interatomic Contacts of Structural Units in PDB entry:
4D7C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4D7C entry

There are 2 chains in PDB entry 4D7C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 298	SER 543
B	PRO 299	SER 543

There are 6 helices in PDB entry 4D7C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	348	354	Right-handed alpha
Helix 2	2	A	416	419	Right-handed 310
Helix 3	3	A	467	469	Right-handed 310
Helix 4	4	B	348	354	Right-handed alpha
Helix 5	5	B	416	419	Right-handed 310
Helix 6	6	B	467	469	Right-handed 310

There are 19 sheets in PDB entry 4D7C. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, BA, BB, BC, BD, BE, BF, BG, BH, BI,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	533	541	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	312	first strand
Strand 2	A	533	541	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	520	first strand
Strand 2	A	525	530	anti-parallel
Strand 3	A	533	541	anti-parallel
Strand 4	A	308	312	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	520	first strand
Strand 2	A	525	530	anti-parallel
Strand 3	A	533	541	anti-parallel
Strand 4	A	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	322	first strand
Strand 2	A	332	336	anti-parallel
Strand 3	A	339	346	anti-parallel
Strand 4	A	358	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	377	381	anti-parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	399	402	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	427	first strand
Strand 2	A	430	436	anti-parallel
Strand 3	A	443	450	anti-parallel
Strand 4	A	455	465	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	475	first strand
Strand 2	A	478	482	anti-parallel
Strand 3	A	488	494	anti-parallel
Strand 4	A	499	501	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	475	first strand
Strand 2	A	478	482	anti-parallel
Strand 3	A	488	494	anti-parallel
Strand 4	A	505	506	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	501	first strand
Strand 2	A	488	494	parallel

Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	304	first strand
Strand 2	B	533	541	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	312	first strand
Strand 2	B	533	541	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	520	first strand
Strand 2	B	525	530	anti-parallel
Strand 3	B	533	541	anti-parallel
Strand 4	B	308	312	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	520	first strand
Strand 2	B	525	530	anti-parallel
Strand 3	B	533	541	anti-parallel
Strand 4	B	301	304	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	322	first strand
Strand 2	B	332	336	anti-parallel
Strand 3	B	339	346	anti-parallel
Strand 4	B	358	373	anti-parallel
Strand 5	B	377	382	anti-parallel
Strand 6	B	387	392	anti-parallel
Strand 7	B	399	402	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	427	first strand
Strand 2	B	430	436	anti-parallel
Strand 3	B	443	450	anti-parallel
Strand 4	B	455	465	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	475	first strand
Strand 2	B	478	482	anti-parallel
Strand 3	B	488	494	anti-parallel
Strand 4	B	499	501	parallel

Back to list of sheets
Back to top of page

There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	475	first strand
Strand 2	B	478	482	anti-parallel
Strand 3	B	488	494	anti-parallel
Strand 4	B	505	506	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	501	first strand
Strand 2	B	488	494	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4D7C

Analysis of interatomic Contacts of Structural Units in PDB entry:
4D7C