Analysis of interatomic Contacts of Structural Units in PDB entry:
4D7E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D7E entry

There are 4 chains in PDB entry 4D7E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 413
B
 GLU 2ALA 417
C
 GLU 2ARG 413
D
 GLU 2VAL 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 4D7E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 27Right-handed alpha
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
78 87Right-handed alpha
Helix 5
5
A
90 99Right-handed alpha
Helix 6
6
A
100 107Right-handed alpha
Helix 7
7
A
113 128Right-handed alpha
Helix 8
8
A
190 200Right-handed alpha
Helix 9
9
A
215 226Right-handed alpha
Helix 10
10
A
248 257Right-handed alpha
Helix 11
11
A
258 262Right-handed 310
Helix 12
12
A
265 275Right-handed alpha
Helix 13
13
A
282 288Right-handed alpha
Helix 14
14
A
338 345Right-handed 310
Helix 15
15
A
347 359Right-handed alpha
Helix 16
16
A
363 370Right-handed alpha
Helix 17
17
A
386 389Right-handed 310
Helix 18
18
A
390 395Right-handed alpha
Helix 19
19
A
403 413Right-handed alpha
Helix 20
20
B
10 26Right-handed alpha
Helix 21
21
B
42 46Right-handed 310
Helix 22
22
B
46 50Right-handed 310
Helix 23
23
B
78 88Right-handed alpha
Helix 24
24
B
90 98Right-handed alpha
Helix 25
25
B
100 107Right-handed alpha
Helix 26
26
B
113 129Right-handed alpha
Helix 27
27
B
191 201Right-handed alpha
Helix 28
28
B
215 226Right-handed alpha
Helix 29
29
B
249 257Right-handed alpha
Helix 30
30
B
258 261Right-handed 310
Helix 31
31
B
265 276Right-handed alpha
Helix 32
32
B
282 291Right-handed alpha
Helix 33
33
B
340 345Right-handed 310
Helix 34
34
B
347 359Right-handed alpha
Helix 35
35
B
363 370Right-handed alpha
Helix 36
36
B
386 389Right-handed 310
Helix 37
37
B
390 395Right-handed alpha
Helix 38
38
B
403 413Right-handed alpha
Helix 39
39
C
10 25Right-handed alpha
Helix 40
40
C
42 46Right-handed 310
Helix 41
41
C
46 50Right-handed 310
Helix 42
42
C
75 77Right-handed 310
Helix 43
43
C
78 87Right-handed alpha
Helix 44
44
C
90 99Right-handed alpha
Helix 45
45
C
100 107Right-handed alpha
Helix 46
46
C
113 128Right-handed alpha
Helix 47
47
C
191 200Right-handed alpha
Helix 48
48
C
215 227Right-handed alpha
Helix 49
49
C
249 257Right-handed alpha
Helix 50
50
C
257 263Right-handed alpha
Helix 51
51
C
265 272Right-handed alpha
Helix 52
52
C
286 292Right-handed alpha
Helix 53
53
C
338 345Right-handed 310
Helix 54
54
C
347 359Right-handed alpha
Helix 55
55
C
363 370Right-handed alpha
Helix 56
56
C
386 389Right-handed 310
Helix 57
57
C
390 395Right-handed alpha
Helix 58
58
C
403 412Right-handed alpha
Helix 59
59
D
10 25Right-handed alpha
Helix 60
60
D
42 46Right-handed 310
Helix 61
61
D
46 50Right-handed 310
Helix 62
62
D
78 88Right-handed alpha
Helix 63
63
D
90 98Right-handed alpha
Helix 64
64
D
100 107Right-handed alpha
Helix 65
65
D
113 128Right-handed alpha
Helix 66
66
D
190 195Right-handed alpha
Helix 67
67
D
216 227Right-handed alpha
Helix 68
68
D
249 257Right-handed alpha
Helix 69
69
D
260 264Right-handed 310
Helix 70
70
D
265 274Right-handed alpha
Helix 71
71
D
340 345Right-handed 310
Helix 72
72
D
347 359Right-handed alpha
Helix 73
73
D
363 371Right-handed alpha
Helix 74
74
D
386 390Right-handed 310
Helix 75
75
D
403 413Right-handed alpha
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There are 14 sheets in PDB entry 4D7E. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
32 37parallel
Strand 3
A
3 7parallel
Strand 4
A
169 172parallel
Strand 5
A
383 385parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 141first strand
Strand 2
A
151 156anti-parallel
Strand 3
A
164 167anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
330 333parallel
Strand 3
A
207 212parallel
Strand 4
A
230 237parallel
Strand 5
A
295 299parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 307first strand
Strand 2
A
312 318anti-parallel
Strand 3
A
321 328anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
32 37parallel
Strand 3
B
3 7parallel
Strand 4
B
169 172parallel
Strand 5
B
383 385parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 142first strand
Strand 2
B
151 156anti-parallel
Strand 3
B
162 167anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
330 333parallel
Strand 3
B
208 212parallel
Strand 4
B
232 237parallel
Strand 5
B
295 299parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
304 308first strand
Strand 2
B
311 315anti-parallel
Strand 3
B
325 328anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 134first strand
Strand 2
C
32 37parallel
Strand 3
C
3 7parallel
Strand 4
C
169 172parallel
Strand 5
C
383 385parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 141first strand
Strand 2
C
151 156anti-parallel
Strand 3
C
163 167anti-parallel
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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 190first strand
Strand 2
C
330 333parallel
Strand 3
C
209 212parallel
Strand 4
C
233 237parallel
Strand 5
C
295 299parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
302 307first strand
Strand 2
C
312 316anti-parallel
Strand 3
C
324 328anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
131 134first strand
Strand 2
D
32 37parallel
Strand 3
D
3 7parallel
Strand 4
D
169 172parallel
Strand 5
D
383 385parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
136 141first strand
Strand 2
D
151 156anti-parallel
Strand 3
D
163 167anti-parallel
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