Analysis of interatomic Contacts of Structural Units in PDB entry:
4D7K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4D7K entry

There are 4 chains in PDB entry 4D7K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 11	THR 345
B	ARG 11	THR 345
C	ARG 11	THR 345
D	GLU 10	ASP 301

There are124 helices in PDB entry 4D7K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	36	Right-handed alpha
Helix 2	2	A	37	42	Right-handed alpha
Helix 3	3	A	49	57	Right-handed alpha
Helix 4	4	A	59	73	Right-handed alpha
Helix 5	5	A	87	92	Right-handed alpha
Helix 6	6	A	101	108	Right-handed alpha
Helix 7	7	A	110	119	Right-handed alpha
Helix 8	8	A	119	127	Right-handed alpha
Helix 9	9	A	130	135	Right-handed alpha
Helix 10	10	A	138	145	Right-handed alpha
Helix 11	11	A	148	166	Right-handed alpha
Helix 12	12	A	166	172	Right-handed alpha
Helix 13	13	A	175	179	Right-handed 310
Helix 14	14	A	190	200	Right-handed alpha
Helix 15	15	A	210	212	Right-handed 310
Helix 16	16	A	213	224	Right-handed alpha
Helix 17	17	A	258	271	Right-handed alpha
Helix 18	18	A	292	306	Right-handed alpha
Helix 19	19	A	312	323	Right-handed alpha
Helix 20	20	B	12	36	Right-handed alpha
Helix 21	21	B	37	42	Right-handed alpha
Helix 22	22	B	49	57	Right-handed alpha
Helix 23	23	B	59	73	Right-handed alpha
Helix 24	24	B	87	92	Right-handed alpha
Helix 25	25	B	101	108	Right-handed alpha
Helix 26	26	B	110	119	Right-handed alpha
Helix 27	27	B	119	127	Right-handed alpha
Helix 28	28	B	129	136	Right-handed alpha
Helix 29	29	B	138	143	Right-handed alpha
Helix 30	30	B	145	147	Right-handed 310
Helix 31	31	B	148	166	Right-handed alpha
Helix 32	32	B	166	172	Right-handed alpha
Helix 33	33	B	175	179	Right-handed 310
Helix 34	34	B	190	200	Right-handed alpha
Helix 35	35	B	213	224	Right-handed alpha
Helix 36	36	B	236	241	Right-handed alpha
Helix 37	37	B	258	273	Right-handed alpha
Helix 38	38	B	292	306	Right-handed alpha
Helix 39	39	B	312	322	Right-handed alpha
Helix 40	40	C	12	36	Right-handed alpha
Helix 41	41	C	37	42	Right-handed alpha
Helix 42	42	C	49	56	Right-handed alpha
Helix 43	43	C	59	73	Right-handed alpha
Helix 44	44	C	87	92	Right-handed alpha
Helix 45	45	C	101	108	Right-handed alpha
Helix 46	46	C	110	119	Right-handed alpha
Helix 47	47	C	119	127	Right-handed alpha
Helix 48	48	C	129	136	Right-handed alpha
Helix 49	49	C	138	143	Right-handed alpha
Helix 50	50	C	144	147	Right-handed 310
Helix 51	51	C	148	174	Right-handed alpha
Helix 52	52	C	175	179	Right-handed 310
Helix 53	53	C	190	200	Right-handed alpha
Helix 54	54	C	213	224	Right-handed alpha
Helix 55	55	C	226	228	Right-handed 310
Helix 56	56	C	253	257	Right-handed 310
Helix 57	57	C	258	274	Right-handed alpha
Helix 58	58	C	292	299	Right-handed alpha
Helix 59	59	C	299	305	Right-handed alpha
Helix 60	60	C	312	323	Right-handed alpha
Helix 61	61	D	11	36	Right-handed alpha
Helix 62	62	D	37	42	Right-handed alpha
Helix 63	63	D	49	57	Right-handed alpha
Helix 64	64	D	59	73	Right-handed alpha
Helix 65	65	D	87	92	Right-handed alpha
Helix 66	66	D	101	108	Right-handed alpha
Helix 67	67	D	110	119	Right-handed alpha
Helix 68	68	D	119	127	Right-handed alpha
Helix 69	69	D	129	135	Right-handed alpha
Helix 70	70	D	138	144	Right-handed alpha
Helix 71	71	D	145	147	Right-handed 310
Helix 72	72	D	148	166	Right-handed alpha
Helix 73	73	D	167	172	Right-handed alpha
Helix 74	74	D	175	179	Right-handed 310
Helix 75	75	D	190	200	Right-handed alpha
Helix 76	76	D	210	212	Right-handed 310
Helix 77	77	D	213	224	Right-handed alpha
Helix 78	78	D	253	257	Right-handed 310
Helix 79	79	D	258	274	Right-handed alpha
Helix 80	80	D	292	298	Right-handed alpha
Helix 81	81	D	299	305	Right-handed alpha
Helix 82	82	D	312	322	Right-handed alpha
Helix 83	83	E	12	36	Right-handed alpha
Helix 84	84	E	37	42	Right-handed alpha
Helix 85	85	E	49	57	Right-handed alpha
Helix 86	86	E	59	73	Right-handed alpha
Helix 87	87	E	87	92	Right-handed alpha
Helix 88	88	E	101	108	Right-handed alpha
Helix 89	89	E	110	118	Right-handed alpha
Helix 90	90	E	119	127	Right-handed alpha
Helix 91	91	E	129	135	Right-handed alpha
Helix 92	92	E	138	143	Right-handed alpha
Helix 93	93	E	145	147	Right-handed 310
Helix 94	94	E	148	166	Right-handed alpha
Helix 95	95	E	167	172	Right-handed alpha
Helix 96	96	E	175	179	Right-handed 310
Helix 97	97	E	190	200	Right-handed alpha
Helix 98	98	E	210	212	Right-handed 310
Helix 99	99	E	213	223	Right-handed alpha
Helix 100	100	E	226	228	Right-handed 310
Helix 101	101	E	253	257	Right-handed 310
Helix 102	102	E	262	274	Right-handed alpha
Helix 103	103	E	292	305	Right-handed alpha
Helix 104	104	E	312	322	Right-handed alpha
Helix 105	105	F	12	36	Right-handed alpha
Helix 106	106	F	37	42	Right-handed alpha
Helix 107	107	F	49	57	Right-handed alpha
Helix 108	108	F	59	73	Right-handed alpha
Helix 109	109	F	87	92	Right-handed alpha
Helix 110	110	F	101	108	Right-handed alpha
Helix 111	111	F	110	118	Right-handed alpha
Helix 112	112	F	119	127	Right-handed alpha
Helix 113	113	F	129	136	Right-handed alpha
Helix 114	114	F	138	143	Right-handed alpha
Helix 115	115	F	144	147	Right-handed 310
Helix 116	116	F	148	172	Right-handed alpha
Helix 117	117	F	175	179	Right-handed 310
Helix 118	118	F	190	200	Right-handed alpha
Helix 119	119	F	213	224	Right-handed alpha
Helix 120	120	F	253	257	Right-handed 310
Helix 121	121	F	258	274	Right-handed alpha
Helix 122	122	F	292	298	Right-handed alpha
Helix 123	123	F	298	305	Right-handed alpha
Helix 124	124	F	313	323	Right-handed alpha

There are 13 sheets in PDB entry 4D7K. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, FB, FC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	83	86	anti-parallel
Strand 3	A	76	79	anti-parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	234	first strand
Strand 2	A	204	209	parallel
Strand 3	A	181	185	parallel
Strand 4	A	247	251	parallel
Strand 5	A	280	285	parallel
Strand 6	A	337	344	anti-parallel
Strand 7	A	325	333	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	83	86	anti-parallel
Strand 3	B	76	79	anti-parallel

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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	234	first strand
Strand 2	B	204	209	parallel
Strand 3	B	181	185	parallel
Strand 4	B	247	251	parallel
Strand 5	B	280	285	parallel
Strand 6	B	337	343	anti-parallel
Strand 7	B	326	333	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	83	86	anti-parallel
Strand 3	C	76	79	anti-parallel

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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	234	first strand
Strand 2	C	204	209	parallel
Strand 3	C	181	185	parallel
Strand 4	C	247	251	parallel
Strand 5	C	280	285	parallel
Strand 6	C	337	344	anti-parallel
Strand 7	C	325	333	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	83	86	anti-parallel
Strand 3	D	76	79	anti-parallel

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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	234	first strand
Strand 2	D	204	209	parallel
Strand 3	D	181	185	parallel
Strand 4	D	247	251	parallel
Strand 5	D	280	285	parallel
Strand 6	D	337	344	anti-parallel
Strand 7	D	325	333	anti-parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	48	first strand
Strand 2	E	83	86	anti-parallel
Strand 3	E	76	79	anti-parallel

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There are 7 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	234	first strand
Strand 2	E	204	209	parallel
Strand 3	E	181	185	parallel
Strand 4	E	247	251	parallel
Strand 5	E	280	285	parallel
Strand 6	E	337	344	anti-parallel
Strand 7	E	325	333	anti-parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	48	first strand
Strand 2	F	83	86	anti-parallel
Strand 3	F	76	79	anti-parallel

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There are 7 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	234	first strand
Strand 2	F	204	209	parallel
Strand 3	F	181	185	parallel
Strand 4	F	247	251	parallel
Strand 5	F	280	285	parallel
Strand 6	F	337	344	anti-parallel
Strand 7	F	325	333	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	287	288	first strand
Strand 2	F	311	312	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4D7K

Analysis of interatomic Contacts of Structural Units in PDB entry:
4D7K