Analysis of interatomic Contacts of Structural Units in PDB entry:
4D7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D7R entry

There is 1 chain in PDB entry 4D7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR -2GLU 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4D7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 16Right-handed alpha
Helix 2
2
A
16 31Right-handed alpha
Helix 3
3
A
34 46Right-handed alpha
Helix 4
4
A
47 50Right-handed 310
Helix 5
5
A
51 61Right-handed alpha
Helix 6
6
A
63 76Right-handed alpha
Helix 7
7
A
83 94Right-handed alpha
Helix 8
8
A
100 119Right-handed alpha
Helix 9
9
A
126 146Right-handed alpha
Helix 10
10
A
150 154Right-handed 310
Helix 11
11
A
156 164Right-handed alpha
Helix 12
12
A
174 188Right-handed alpha
Helix 13
13
A
207 210Right-handed 310
Helix 14
14
A
211 221Right-handed alpha
Helix 15
15
A
227 231Right-handed 310
Helix 16
16
A
232 236Right-handed 310
Helix 17
17
A
247 255Right-handed alpha
Helix 18
18
A
282 287Right-handed alpha
Helix 19
19
A
301 312Right-handed alpha
Helix 20
20
A
327 349Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 4D7R.

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 244first strand
Strand 2
A
256 264anti-parallel
Strand 3
A
270 276anti-parallel
Strand 4
A
291 296anti-parallel
Strand 5
A
200 204anti-parallel
Strand 6
A
319 321anti-parallel
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