Analysis of interatomic Contacts of Structural Units in PDB entry:
4D7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D7W entry

There is 1 chain in PDB entry 4D7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39ASP 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 4D7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 51Right-handed alpha
Helix 2
2
A
53 69Right-handed alpha
Helix 3
3
A
70 75Right-handed alpha
Helix 4
4
A
81 90Right-handed alpha
Helix 5
5
A
106 109Right-handed 310
Helix 6
6
A
119 124Right-handed alpha
Helix 7
7
A
160 164Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 4D7W. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 105first strand
Strand 2
A
110 116anti-parallel
Strand 3
A
127 129parallel
Strand 4
A
142 147anti-parallel
Strand 5
A
204 212parallel
Strand 6
A
219 228anti-parallel
Strand 7
A
177 189anti-parallel
Strand 8
A
169 174anti-parallel
Strand 9
A
99 105anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
155 157anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il