Analysis of interatomic Contacts of Structural Units in PDB entry:
4D80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D80 entry

There are 6 chains in PDB entry 4D80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 97LEU 369
B
 THR 98LYS 367
C
 LYS 96LYS 367
D
 VAL 97LEU 369
E
 LYS 96LYS 367
F
 LYS 96LEU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 4D80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
106 122Right-handed alpha
Helix 2
2
A
123 126Right-handed 310
Helix 3
3
A
143 155Right-handed alpha
Helix 4
4
A
164 170Right-handed alpha
Helix 5
5
A
175 190Right-handed alpha
Helix 6
6
A
203 209Right-handed 310
Helix 7
7
A
219 233Right-handed alpha
Helix 8
8
A
254 259Right-handed alpha
Helix 9
9
A
271 284Right-handed alpha
Helix 10
10
A
293 301Right-handed alpha
Helix 11
11
A
306 327Right-handed alpha
Helix 12
12
A
338 347Right-handed alpha
Helix 13
13
A
352 365Right-handed alpha
Helix 14
14
B
105 122Right-handed alpha
Helix 15
15
B
123 126Right-handed 310
Helix 16
16
B
143 155Right-handed alpha
Helix 17
17
B
164 168Right-handed alpha
Helix 18
18
B
175 190Right-handed alpha
Helix 19
19
B
203 208Right-handed 310
Helix 20
20
B
219 233Right-handed alpha
Helix 21
21
B
254 259Right-handed alpha
Helix 22
22
B
271 284Right-handed alpha
Helix 23
23
B
293 301Right-handed alpha
Helix 24
24
B
306 328Right-handed alpha
Helix 25
25
B
337 347Right-handed alpha
Helix 26
26
B
352 366Right-handed alpha
Helix 27
27
C
107 122Right-handed alpha
Helix 28
28
C
123 126Right-handed 310
Helix 29
29
C
143 155Right-handed alpha
Helix 30
30
C
164 170Right-handed alpha
Helix 31
31
C
175 190Right-handed alpha
Helix 32
32
C
203 209Right-handed 310
Helix 33
33
C
213 218Right-handed alpha
Helix 34
34
C
219 233Right-handed alpha
Helix 35
35
C
254 259Right-handed alpha
Helix 36
36
C
271 284Right-handed alpha
Helix 37
37
C
293 301Right-handed alpha
Helix 38
38
C
306 328Right-handed alpha
Helix 39
39
C
336 347Right-handed alpha
Helix 40
40
C
352 366Right-handed alpha
Helix 41
41
D
105 122Right-handed alpha
Helix 42
42
D
123 126Right-handed 310
Helix 43
43
D
143 155Right-handed alpha
Helix 44
44
D
164 170Right-handed alpha
Helix 45
45
D
175 190Right-handed alpha
Helix 46
46
D
203 209Right-handed 310
Helix 47
47
D
219 233Right-handed alpha
Helix 48
48
D
254 259Right-handed alpha
Helix 49
49
D
271 284Right-handed alpha
Helix 50
50
D
293 301Right-handed alpha
Helix 51
51
D
306 328Right-handed alpha
Helix 52
52
D
336 347Right-handed alpha
Helix 53
53
D
352 365Right-handed alpha
Helix 54
54
E
105 122Right-handed alpha
Helix 55
55
E
123 126Right-handed 310
Helix 56
56
E
143 155Right-handed alpha
Helix 57
57
E
164 168Right-handed alpha
Helix 58
58
E
175 190Right-handed alpha
Helix 59
59
E
203 208Right-handed 310
Helix 60
60
E
219 233Right-handed alpha
Helix 61
61
E
254 259Right-handed alpha
Helix 62
62
E
271 284Right-handed alpha
Helix 63
63
E
293 301Right-handed alpha
Helix 64
64
E
306 328Right-handed alpha
Helix 65
65
E
336 347Right-handed alpha
Helix 66
66
E
352 366Right-handed alpha
Helix 67
67
F
107 122Right-handed alpha
Helix 68
68
F
123 126Right-handed 310
Helix 69
69
F
143 155Right-handed alpha
Helix 70
70
F
164 170Right-handed alpha
Helix 71
71
F
175 190Right-handed alpha
Helix 72
72
F
203 209Right-handed 310
Helix 73
73
F
219 233Right-handed alpha
Helix 74
74
F
254 259Right-handed alpha
Helix 75
75
F
271 284Right-handed alpha
Helix 76
76
F
293 301Right-handed alpha
Helix 77
77
F
306 328Right-handed alpha
Helix 78
78
F
336 347Right-handed alpha
Helix 79
79
F
352 366Right-handed alpha
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There are 6 sheets in PDB entry 4D80. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 163first strand
Strand 2
A
198 202parallel
Strand 3
A
242 247parallel
Strand 4
A
133 137parallel
Strand 5
A
263 266parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 163first strand
Strand 2
B
198 202parallel
Strand 3
B
242 247parallel
Strand 4
B
133 137parallel
Strand 5
B
263 266parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
159 163first strand
Strand 2
C
198 202parallel
Strand 3
C
242 247parallel
Strand 4
C
133 137parallel
Strand 5
C
263 266parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
159 163first strand
Strand 2
D
198 202parallel
Strand 3
D
242 247parallel
Strand 4
D
133 137parallel
Strand 5
D
263 266parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
159 163first strand
Strand 2
E
198 202parallel
Strand 3
E
242 247parallel
Strand 4
E
133 137parallel
Strand 5
E
263 266parallel
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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
159 163first strand
Strand 2
F
198 202parallel
Strand 3
F
242 247parallel
Strand 4
F
133 137parallel
Strand 5
F
263 266parallel
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