Analysis of interatomic Contacts of Structural Units in PDB entry:
4D82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D82 entry

There are 3 chains in PDB entry 4D82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 97PHE 366
B
 ASP 88PHE 366
C
 VAL 90PHE 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4D82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
98 102Right-handed 310
Helix 2
2
A
105 116Right-handed alpha
Helix 3
3
A
116 122Right-handed alpha
Helix 4
4
A
123 126Right-handed 310
Helix 5
5
A
143 156Right-handed alpha
Helix 6
6
A
164 168Right-handed alpha
Helix 7
7
A
173 194Right-handed alpha
Helix 8
8
A
203 209Right-handed 310
Helix 9
9
A
217 231Right-handed alpha
Helix 10
10
A
249 253Right-handed 310
Helix 11
11
A
254 260Right-handed alpha
Helix 12
12
A
271 284Right-handed alpha
Helix 13
13
A
293 301Right-handed alpha
Helix 14
14
A
305 327Right-handed alpha
Helix 15
15
A
336 347Right-handed alpha
Helix 16
16
A
352 365Right-handed alpha
Helix 17
17
B
98 102Right-handed 310
Helix 18
18
B
105 116Right-handed alpha
Helix 19
19
B
116 122Right-handed alpha
Helix 20
20
B
123 126Right-handed 310
Helix 21
21
B
143 156Right-handed alpha
Helix 22
22
B
164 168Right-handed alpha
Helix 23
23
B
173 194Right-handed alpha
Helix 24
24
B
203 209Right-handed 310
Helix 25
25
B
216 231Right-handed alpha
Helix 26
26
B
249 253Right-handed 310
Helix 27
27
B
254 260Right-handed alpha
Helix 28
28
B
271 284Right-handed alpha
Helix 29
29
B
293 301Right-handed alpha
Helix 30
30
B
305 327Right-handed alpha
Helix 31
31
B
336 347Right-handed alpha
Helix 32
32
B
352 365Right-handed alpha
Helix 33
33
C
98 102Right-handed 310
Helix 34
34
C
105 116Right-handed alpha
Helix 35
35
C
116 122Right-handed alpha
Helix 36
36
C
123 126Right-handed 310
Helix 37
37
C
143 156Right-handed alpha
Helix 38
38
C
164 168Right-handed alpha
Helix 39
39
C
171 194Right-handed alpha
Helix 40
40
C
203 209Right-handed 310
Helix 41
41
C
217 231Right-handed alpha
Helix 42
42
C
254 260Right-handed alpha
Helix 43
43
C
271 284Right-handed alpha
Helix 44
44
C
293 301Right-handed alpha
Helix 45
45
C
305 327Right-handed alpha
Helix 46
46
C
336 347Right-handed alpha
Helix 47
47
C
352 366Right-handed alpha
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There are 3 sheets in PDB entry 4D82. Click on sheet of interest to get list of strands forming it: AA, BA, CA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 163first strand
Strand 2
A
197 202parallel
Strand 3
A
241 247parallel
Strand 4
A
133 137parallel
Strand 5
A
263 266parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
158 163anti-parallel
Strand 3
B
197 202parallel
Strand 4
B
241 247parallel
Strand 5
B
133 137parallel
Strand 6
B
263 266parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 163first strand
Strand 2
C
197 202parallel
Strand 3
C
241 247parallel
Strand 4
C
133 137parallel
Strand 5
C
263 266parallel
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