Analysis of interatomic Contacts of Structural Units in PDB entry:
4D85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D85 entry

There is 1 chain in PDB entry 4D85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ASN 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4D85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 59Right-handed 310
Helix 2
2
A
125 129Right-handed 310
Helix 3
3
A
137 146Right-handed alpha
Helix 4
4
A
172 174Right-handed 310
Helix 5
5
A
208 213Right-handed 310
Helix 6
6
A
230 244Right-handed alpha
Helix 7
7
A
250 255Right-handed alpha
Helix 8
8
A
268 272Right-handed 310
Helix 9
9
A
293 297Right-handed alpha
Helix 10
10
A
321 326Right-handed alpha
Helix 11
11
A
365 370Right-handed 310
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There are 5 sheets in PDB entry 4D85. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 72first strand
Strand 2
A
77 88anti-parallel
Strand 3
A
17 22anti-parallel
Strand 4
A
8 11anti-parallel
Strand 5
A
161 168anti-parallel
Strand 6
A
152 157anti-parallel
Strand 7
A
328 333anti-parallel
Strand 8
A
338 344anti-parallel
Strand 9
A
176 184anti-parallel
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There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 72first strand
Strand 2
A
77 88anti-parallel
Strand 3
A
97 108anti-parallel
Strand 4
A
40 43parallel
Strand 5
A
119 122anti-parallel
Strand 6
A
27 34parallel
Strand 7
A
17 22anti-parallel
Strand 8
A
8 11anti-parallel
Strand 9
A
161 168anti-parallel
Strand 10
A
152 157anti-parallel
Strand 11
A
328 333anti-parallel
Strand 12
A
338 344anti-parallel
Strand 13
A
176 184anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
217 219anti-parallel
Strand 3
A
319 320parallel
Strand 4
A
226 229anti-parallel
Strand 5
A
311 314parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
195 200anti-parallel
Strand 3
A
275 280anti-parallel
Strand 4
A
286 292anti-parallel
Strand 5
A
356 362anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
305 309anti-parallel
Strand 3
A
298 300anti-parallel
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