Analysis of interatomic Contacts of Structural Units in PDB entry:
4D8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D8D entry

There are 4 chains in PDB entry 4D8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 85VAL 141
B
 PRO 69LYS 204
C
 VAL 84VAL 141
D
 VAL 70LYS 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 4D8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
80 95Right-handed alpha
Helix 2
2
B
103 119Right-handed alpha
Helix 3
3
B
187 191Right-handed 310
Helix 4
4
B
193 199Right-handed alpha
Helix 5
5
B
200 203Right-handed 310
Helix 6
6
D
80 95Right-handed alpha
Helix 7
7
D
103 119Right-handed alpha
Helix 8
8
D
187 191Right-handed 310
Helix 9
9
D
193 199Right-handed alpha
Helix 10
10
D
200 203Right-handed 310
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There are 4 sheets in PDB entry 4D8D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
119 124anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
86 89anti-parallel
Strand 5
A
138 140anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
181 185anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 134first strand
Strand 2
C
119 124anti-parallel
Strand 3
C
108 113anti-parallel
Strand 4
C
86 89anti-parallel
Strand 5
C
138 140anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
143 147first strand
Strand 2
D
181 185anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il