Analysis of interatomic Contacts of Structural Units in PDB entry:
4D8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D8J entry

There are 16 chains in PDB entry 4D8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLY 148
N
 T 1 A 19
M
 T 1 A 19
A
 MET 1LYS 149
D
 MET 1LYS 149
F
 T 1 A 19
E
 T 1 A 19
C
 MET 1GLY 148
H
 MET 1GLY 148
J
 T 1 A 19
I
 T 1 A 19
G
 LYS 2LYS 149
L
 MET 1LYS 149
P
 T 1 A 19
O
 T 1 A 19
K
 MET 1GLY 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 4D8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
6 25Right-handed alpha
Helix 2
2
B
34 36Right-handed 310
Helix 3
3
B
37 46Right-handed alpha
Helix 4
4
B
50 61Right-handed alpha
Helix 5
5
B
66 85Right-handed alpha
Helix 6
6
B
97 112Right-handed alpha
Helix 7
7
B
114 147Right-handed alpha
Helix 8
8
A
6 26Right-handed alpha
Helix 9
9
A
35 46Right-handed alpha
Helix 10
10
A
50 61Right-handed alpha
Helix 11
11
A
66 85Right-handed alpha
Helix 12
12
A
98 112Right-handed alpha
Helix 13
13
A
114 128Right-handed alpha
Helix 14
14
A
128 148Right-handed alpha
Helix 15
15
D
9 23Right-handed alpha
Helix 16
16
D
35 46Right-handed alpha
Helix 17
17
D
50 61Right-handed alpha
Helix 18
18
D
65 83Right-handed alpha
Helix 19
19
D
98 112Right-handed alpha
Helix 20
20
D
114 145Right-handed alpha
Helix 21
21
C
9 23Right-handed alpha
Helix 22
22
C
50 59Right-handed alpha
Helix 23
23
C
65 84Right-handed alpha
Helix 24
24
C
98 112Right-handed alpha
Helix 25
25
C
114 147Right-handed alpha
Helix 26
26
H
7 19Right-handed alpha
Helix 27
27
H
33 38Right-handed alpha
Helix 28
28
H
38 47Right-handed alpha
Helix 29
29
H
50 59Right-handed alpha
Helix 30
30
H
65 85Right-handed alpha
Helix 31
31
H
86 90Right-handed 310
Helix 32
32
H
98 112Right-handed alpha
Helix 33
33
H
114 145Right-handed alpha
Helix 34
34
G
7 23Right-handed alpha
Helix 35
35
G
38 46Right-handed alpha
Helix 36
36
G
50 55Right-handed 310
Helix 37
37
G
56 61Right-handed alpha
Helix 38
38
G
63 82Right-handed alpha
Helix 39
39
G
97 109Right-handed alpha
Helix 40
40
G
114 146Right-handed alpha
Helix 41
41
L
6 25Right-handed alpha
Helix 42
42
L
35 46Right-handed alpha
Helix 43
43
L
52 59Right-handed alpha
Helix 44
44
L
65 85Right-handed alpha
Helix 45
45
L
98 111Right-handed alpha
Helix 46
46
L
114 128Right-handed alpha
Helix 47
47
L
128 142Right-handed alpha
Helix 48
48
L
143 148Right-handed 310
Helix 49
49
K
6 25Right-handed alpha
Helix 50
50
K
35 43Right-handed alpha
Helix 51
51
K
46 52Right-handed 310
Helix 52
52
K
53 59Right-handed alpha
Helix 53
53
K
63 65Right-handed 310
Helix 54
54
K
66 84Right-handed alpha
Helix 55
55
K
97 112Right-handed alpha
Helix 56
56
K
114 127Right-handed alpha
Helix 57
57
K
128 136Right-handed alpha
Helix 58
58
K
139 148Right-handed alpha
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There are 4 sheets in PDB entry 4D8J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 96first strand
Strand 2
A
92 97anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 97first strand
Strand 2
C
91 97anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
92 97first strand
Strand 2
G
91 96anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
92 97first strand
Strand 2
K
91 96anti-parallel
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