Analysis of interatomic Contacts of Structural Units in PDB entry:
4D8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D8L entry

There is 1 chain in PDB entry 4D8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLU 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4D8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
55 67Right-handed alpha
Helix 3
3
A
76 80Right-handed 310
Helix 4
4
A
83 93Right-handed alpha
Helix 5
5
A
108 118Right-handed alpha
Helix 6
6
A
128 133Right-handed alpha
Helix 7
7
A
136 145Right-handed alpha
Helix 8
8
A
158 160Right-handed 310
Helix 9
9
A
161 172Right-handed alpha
Helix 10
10
A
180 183Right-handed 310
Helix 11
11
A
185 189Right-handed 310
Helix 12
12
A
192 205Right-handed alpha
Helix 13
13
A
214 219Right-handed alpha
Helix 14
14
A
225 239Right-handed alpha
Helix 15
15
A
260 267Right-handed alpha
Helix 16
16
A
267 272Right-handed alpha
Helix 17
17
A
274 283Right-handed alpha
Helix 18
18
A
283 291Right-handed alpha
Helix 19
19
A
292 295Right-handed 310
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There is 1 sheet ( A) in PDB entry 4D8L.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
70 74parallel
Strand 3
A
97 101parallel
Strand 4
A
120 126parallel
Strand 5
A
152 156parallel
Strand 6
A
176 178parallel
Strand 7
A
208 211parallel
Strand 8
A
243 244parallel
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