Analysis of interatomic Contacts of Structural Units in PDB entry:
4D8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D8M entry

There is 1 chain in PDB entry 4D8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 112GLN 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 4D8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
114 162Right-handed alpha
Helix 2
2
A
186 208Right-handed alpha
Helix 3
3
A
209 212Right-handed 310
Helix 4
4
A
221 257Right-handed alpha
Helix 5
5
A
261 291Right-handed alpha
Helix 6
6
A
298 316Right-handed alpha
Helix 7
7
A
316 321Right-handed alpha
Helix 8
8
A
322 327Right-handed 310
Helix 9
9
A
362 366Right-handed 310
Helix 10
10
A
372 376Right-handed 310
Helix 11
11
A
387 391Right-handed 310
Helix 12
12
A
488 496Right-handed alpha
Helix 13
13
A
570 574Right-handed 310
Helix 14
14
A
584 587Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 4D8M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
561 565parallel
Strand 3
A
686 695anti-parallel
Strand 4
A
588 593anti-parallel
Strand 5
A
580 583anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
561 565parallel
Strand 3
A
686 695anti-parallel
Strand 4
A
609 619anti-parallel
Strand 5
A
658 669anti-parallel
Strand 6
A
652 653anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
531 538anti-parallel
Strand 3
A
510 520anti-parallel
Strand 4
A
368 370anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 432first strand
Strand 2
A
415 423anti-parallel
Strand 3
A
398 406anti-parallel
Strand 4
A
445 451anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
A
470 479anti-parallel
Strand 3
A
454 464anti-parallel
Strand 4
A
500 501anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 547first strand
Strand 2
A
598 605parallel
Strand 3
A
672 680anti-parallel
Strand 4
A
623 629anti-parallel
Strand 5
A
636 642anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il