Analysis of interatomic Contacts of Structural Units in PDB entry:
4D8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D8T entry

There are 8 chains in PDB entry 4D8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 50
A
 LEU 52VAL 328
B
 THR 7ASN 50
B
 LEU 52VAL 328
C
 LEU 6ASN 50
C
 LEU 52VAL 328
D
 MET 1ASN 50
D
 LEU 52VAL 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 4D8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 9Right-handed 310
Helix 2
2
A
24 32Right-handed alpha
Helix 3
3
A
50 65Right-handed alpha
Helix 4
4
A
78 92Right-handed alpha
Helix 5
5
A
107 113Right-handed alpha
Helix 6
6
A
113 122Right-handed alpha
Helix 7
7
A
134 149Right-handed alpha
Helix 8
8
A
157 161Right-handed 310
Helix 9
9
A
162 181Right-handed alpha
Helix 10
10
A
196 210Right-handed alpha
Helix 11
11
A
223 242Right-handed alpha
Helix 12
12
A
265 280Right-handed alpha
Helix 13
13
A
287 301Right-handed alpha
Helix 14
14
A
318 325Right-handed alpha
Helix 15
15
B
24 32Right-handed alpha
Helix 16
16
B
50 65Right-handed alpha
Helix 17
17
B
78 92Right-handed alpha
Helix 18
18
B
107 113Right-handed alpha
Helix 19
19
B
113 122Right-handed alpha
Helix 20
20
B
134 148Right-handed alpha
Helix 21
21
B
157 161Right-handed 310
Helix 22
22
B
162 180Right-handed alpha
Helix 23
23
B
196 210Right-handed alpha
Helix 24
24
B
223 242Right-handed alpha
Helix 25
25
B
265 280Right-handed alpha
Helix 26
26
B
287 301Right-handed alpha
Helix 27
27
B
319 325Right-handed alpha
Helix 28
28
C
24 32Right-handed alpha
Helix 29
29
C
50 65Right-handed alpha
Helix 30
30
C
78 92Right-handed alpha
Helix 31
31
C
107 113Right-handed alpha
Helix 32
32
C
113 122Right-handed alpha
Helix 33
33
C
134 149Right-handed alpha
Helix 34
34
C
157 161Right-handed 310
Helix 35
35
C
162 181Right-handed alpha
Helix 36
36
C
196 210Right-handed alpha
Helix 37
37
C
223 242Right-handed alpha
Helix 38
38
C
265 280Right-handed alpha
Helix 39
39
C
287 301Right-handed alpha
Helix 40
40
C
319 325Right-handed alpha
Helix 41
41
D
3 9Right-handed 310
Helix 42
42
D
24 32Right-handed alpha
Helix 43
43
D
50 65Right-handed alpha
Helix 44
44
D
78 92Right-handed alpha
Helix 45
45
D
107 113Right-handed alpha
Helix 46
46
D
113 122Right-handed alpha
Helix 47
47
D
134 149Right-handed alpha
Helix 48
48
D
157 161Right-handed 310
Helix 49
49
D
162 180Right-handed alpha
Helix 50
50
D
196 210Right-handed alpha
Helix 51
51
D
223 242Right-handed alpha
Helix 52
52
D
265 280Right-handed alpha
Helix 53
53
D
287 301Right-handed alpha
Helix 54
54
D
318 325Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4D8T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
35 39anti-parallel
Strand 3
A
310 314parallel
Strand 4
A
188 193parallel
Strand 5
A
214 219parallel
Strand 6
A
251 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
94 100parallel
Strand 3
A
69 75parallel
Strand 4
A
153 155parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
35 39anti-parallel
Strand 3
B
310 314parallel
Strand 4
B
188 193parallel
Strand 5
B
214 219parallel
Strand 6
B
251 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 128first strand
Strand 2
B
94 100parallel
Strand 3
B
69 75parallel
Strand 4
B
153 155parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 23first strand
Strand 2
C
35 39anti-parallel
Strand 3
C
310 314parallel
Strand 4
C
188 193parallel
Strand 5
C
214 219parallel
Strand 6
C
251 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 128first strand
Strand 2
C
94 100parallel
Strand 3
C
69 75parallel
Strand 4
C
153 155parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 23first strand
Strand 2
D
35 39anti-parallel
Strand 3
D
310 314parallel
Strand 4
D
188 193parallel
Strand 5
D
214 219parallel
Strand 6
D
251 253parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 128first strand
Strand 2
D
94 100parallel
Strand 3
D
69 75parallel
Strand 4
D
153 155parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il