Analysis of interatomic Contacts of Structural Units in PDB entry:
4D8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D8U entry

There are 16 chains in PDB entry 4D8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1ASN 50
A
 LEU 52VAL 328
B
 LEU 6ASN 50
B
 LEU 52VAL 328
C
 LEU 6ASN 50
C
 LEU 52VAL 328
D
 SER 0ASN 50
D
 LEU 52VAL 328
E
 ALA -1ASN 50
E
 LEU 52VAL 328
F
 HIS 5ASN 50
F
 LEU 52VAL 328
G
 HIS 5ASN 50
G
 LEU 52VAL 328
H
 MET -2ASN 50
H
 LEU 52VAL 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are108 helices in PDB entry 4D8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
24 32Right-handed alpha
Helix 3
3
A
50 65Right-handed alpha
Helix 4
4
A
78 92Right-handed alpha
Helix 5
5
A
107 113Right-handed alpha
Helix 6
6
A
113 122Right-handed alpha
Helix 7
7
A
134 148Right-handed alpha
Helix 8
8
A
157 161Right-handed 310
Helix 9
9
A
166 181Right-handed alpha
Helix 10
10
A
196 210Right-handed alpha
Helix 11
11
A
223 242Right-handed alpha
Helix 12
12
A
265 280Right-handed alpha
Helix 13
13
A
287 301Right-handed alpha
Helix 14
14
A
319 324Right-handed alpha
Helix 15
15
B
24 32Right-handed alpha
Helix 16
16
B
50 65Right-handed alpha
Helix 17
17
B
78 92Right-handed alpha
Helix 18
18
B
107 113Right-handed alpha
Helix 19
19
B
113 122Right-handed alpha
Helix 20
20
B
134 150Right-handed alpha
Helix 21
21
B
157 161Right-handed 310
Helix 22
22
B
166 181Right-handed alpha
Helix 23
23
B
196 210Right-handed alpha
Helix 24
24
B
223 243Right-handed alpha
Helix 25
25
B
265 280Right-handed alpha
Helix 26
26
B
287 301Right-handed alpha
Helix 27
27
B
319 324Right-handed alpha
Helix 28
28
C
24 32Right-handed alpha
Helix 29
29
C
50 65Right-handed alpha
Helix 30
30
C
78 92Right-handed alpha
Helix 31
31
C
107 113Right-handed alpha
Helix 32
32
C
113 122Right-handed alpha
Helix 33
33
C
134 150Right-handed alpha
Helix 34
34
C
157 161Right-handed 310
Helix 35
35
C
166 181Right-handed alpha
Helix 36
36
C
196 210Right-handed alpha
Helix 37
37
C
223 242Right-handed alpha
Helix 38
38
C
265 280Right-handed alpha
Helix 39
39
C
287 301Right-handed alpha
Helix 40
40
C
319 324Right-handed alpha
Helix 41
41
D
3 7Right-handed 310
Helix 42
42
D
24 32Right-handed alpha
Helix 43
43
D
50 65Right-handed alpha
Helix 44
44
D
78 92Right-handed alpha
Helix 45
45
D
107 113Right-handed alpha
Helix 46
46
D
113 122Right-handed alpha
Helix 47
47
D
134 150Right-handed alpha
Helix 48
48
D
157 161Right-handed 310
Helix 49
49
D
166 181Right-handed alpha
Helix 50
50
D
196 210Right-handed alpha
Helix 51
51
D
223 242Right-handed alpha
Helix 52
52
D
265 280Right-handed alpha
Helix 53
53
D
287 301Right-handed alpha
Helix 54
54
D
319 324Right-handed alpha
Helix 55
55
E
3 8Right-handed 310
Helix 56
56
E
24 32Right-handed alpha
Helix 57
57
E
50 65Right-handed alpha
Helix 58
58
E
78 92Right-handed alpha
Helix 59
59
E
107 113Right-handed alpha
Helix 60
60
E
113 122Right-handed alpha
Helix 61
61
E
134 151Right-handed alpha
Helix 62
62
E
157 161Right-handed 310
Helix 63
63
E
166 181Right-handed alpha
Helix 64
64
E
196 210Right-handed alpha
Helix 65
65
E
223 242Right-handed alpha
Helix 66
66
E
265 280Right-handed alpha
Helix 67
67
E
287 301Right-handed alpha
Helix 68
68
E
319 324Right-handed alpha
Helix 69
69
F
24 32Right-handed alpha
Helix 70
70
F
50 65Right-handed alpha
Helix 71
71
F
78 92Right-handed alpha
Helix 72
72
F
107 113Right-handed alpha
Helix 73
73
F
113 122Right-handed alpha
Helix 74
74
F
134 147Right-handed alpha
Helix 75
75
F
157 161Right-handed 310
Helix 76
76
F
166 181Right-handed alpha
Helix 77
77
F
196 210Right-handed alpha
Helix 78
78
F
223 243Right-handed alpha
Helix 79
79
F
265 280Right-handed alpha
Helix 80
80
F
287 301Right-handed alpha
Helix 81
81
F
319 324Right-handed alpha
Helix 82
82
G
24 32Right-handed alpha
Helix 83
83
G
49 65Right-handed alpha
Helix 84
84
G
78 92Right-handed alpha
Helix 85
85
G
107 113Right-handed alpha
Helix 86
86
G
113 122Right-handed alpha
Helix 87
87
G
134 150Right-handed alpha
Helix 88
88
G
157 161Right-handed 310
Helix 89
89
G
166 181Right-handed alpha
Helix 90
90
G
196 210Right-handed alpha
Helix 91
91
G
223 242Right-handed alpha
Helix 92
92
G
265 280Right-handed alpha
Helix 93
93
G
287 301Right-handed alpha
Helix 94
94
G
319 325Right-handed alpha
Helix 95
95
H
3 7Right-handed 310
Helix 96
96
H
24 32Right-handed alpha
Helix 97
97
H
50 65Right-handed alpha
Helix 98
98
H
78 92Right-handed alpha
Helix 99
99
H
107 113Right-handed alpha
Helix 100
100
H
113 122Right-handed alpha
Helix 101
101
H
134 150Right-handed alpha
Helix 102
102
H
157 161Right-handed 310
Helix 103
103
H
166 181Right-handed alpha
Helix 104
104
H
196 210Right-handed alpha
Helix 105
105
H
223 242Right-handed alpha
Helix 106
106
H
265 280Right-handed alpha
Helix 107
107
H
287 301Right-handed alpha
Helix 108
108
H
319 324Right-handed alpha
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There are 16 sheets in PDB entry 4D8U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
35 39anti-parallel
Strand 3
A
310 314parallel
Strand 4
A
188 193parallel
Strand 5
A
214 219parallel
Strand 6
A
251 253parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
94 100parallel
Strand 3
A
69 75parallel
Strand 4
A
153 155parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
35 39anti-parallel
Strand 3
B
310 314parallel
Strand 4
B
188 193parallel
Strand 5
B
214 219parallel
Strand 6
B
251 253parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 75first strand
Strand 2
B
94 100parallel
Strand 3
B
125 128parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 23first strand
Strand 2
C
35 39anti-parallel
Strand 3
C
310 314parallel
Strand 4
C
188 193parallel
Strand 5
C
214 219parallel
Strand 6
C
251 253parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 128first strand
Strand 2
C
94 100parallel
Strand 3
C
69 75parallel
Strand 4
C
153 155parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 23first strand
Strand 2
D
35 39anti-parallel
Strand 3
D
310 314parallel
Strand 4
D
188 193parallel
Strand 5
D
214 219parallel
Strand 6
D
251 253parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 128first strand
Strand 2
D
94 100parallel
Strand 3
D
69 75parallel
Strand 4
D
153 156parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 23first strand
Strand 2
E
35 39anti-parallel
Strand 3
E
310 314parallel
Strand 4
E
188 193parallel
Strand 5
E
214 219parallel
Strand 6
E
251 253parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
125 128first strand
Strand 2
E
94 100parallel
Strand 3
E
69 75parallel
Strand 4
E
153 155parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
21 23first strand
Strand 2
F
35 39anti-parallel
Strand 3
F
310 314parallel
Strand 4
F
188 193parallel
Strand 5
F
214 219parallel
Strand 6
F
251 253parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
69 75first strand
Strand 2
F
94 100parallel
Strand 3
F
125 128parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
21 23first strand
Strand 2
G
35 39anti-parallel
Strand 3
G
310 314parallel
Strand 4
G
188 193parallel
Strand 5
G
214 219parallel
Strand 6
G
251 253parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
125 128first strand
Strand 2
G
94 100parallel
Strand 3
G
69 75parallel
Strand 4
G
153 155parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
21 23first strand
Strand 2
H
35 39anti-parallel
Strand 3
H
310 314parallel
Strand 4
H
188 193parallel
Strand 5
H
214 219parallel
Strand 6
H
251 253parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
125 128first strand
Strand 2
H
94 100parallel
Strand 3
H
69 75parallel
Strand 4
H
153 155parallel
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