Analysis of interatomic Contacts of Structural Units in PDB entry:
4D94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4D94 entry

There is 1 chain in PDB entry 4D94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 22TYR 1308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4D94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
235 238Right-handed 310
Helix 2
2
A
266 269Right-handed 310
Helix 3
3
A
370 372Right-handed 310
Helix 4
4
A
418 423Right-handed alpha
Helix 5
5
A
483 487Right-handed 310
Helix 6
6
A
512 515Right-handed 310
Helix 7
7
A
552 558Right-handed alpha
Helix 8
8
A
563 573Right-handed alpha
Helix 9
9
A
584 590Right-handed alpha
Helix 10
10
A
726 728Right-handed 310
Helix 11
11
A
842 848Right-handed alpha
Helix 12
12
A
861 866Right-handed 310
Helix 13
13
A
867 880Right-handed alpha
Helix 14
14
A
884 903Right-handed alpha
Helix 15
15
A
904 906Right-handed 310
Helix 16
16
A
921 936Right-handed alpha
Helix 17
17
A
943 957Right-handed alpha
Helix 18
18
A
972 977Right-handed alpha
Helix 19
19
A
982 995Right-handed alpha
Helix 20
20
A
996 1003Right-handed alpha
Helix 21
21
A
1003 1018Right-handed alpha
Helix 22
22
A
1019 1021Right-handed 310
Helix 23
23
A
1023 1038Right-handed alpha
Helix 24
24
A
1041 1052Right-handed alpha
Helix 25
25
A
1068 1083Right-handed alpha
Helix 26
26
A
1085 1098Right-handed alpha
Helix 27
27
A
1108 1127Right-handed alpha
Helix 28
28
A
1324 1329Right-handed alpha
Helix 29
29
A
1330 1334Right-handed 310
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There are 21 sheets in PDB entry 4D94. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 85first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
23 27anti-parallel
Strand 4
A
591 595anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
109 116parallel
Strand 3
A
96 102anti-parallel
Strand 4
A
49 56anti-parallel
Strand 5
A
72 76anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 127first strand
Strand 2
A
137 145anti-parallel
Strand 3
A
182 188anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
208 216parallel
Strand 3
A
196 203anti-parallel
Strand 4
A
157 163anti-parallel
Strand 5
A
169 177anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 230first strand
Strand 2
A
240 249anti-parallel
Strand 3
A
281 287anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 279first strand
Strand 2
A
256 265anti-parallel
Strand 3
A
297 308anti-parallel
Strand 4
A
314 324anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 334first strand
Strand 2
A
345 353anti-parallel
Strand 3
A
384 389anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 378first strand
Strand 2
A
363 368anti-parallel
Strand 3
A
397 403anti-parallel
Strand 4
A
409 415anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 429first strand
Strand 2
A
438 449anti-parallel
Strand 3
A
473 481anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 468first strand
Strand 2
A
452 458anti-parallel
Strand 3
A
489 498anti-parallel
Strand 4
A
501 510anti-parallel
Strand 5
A
600 601parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 522first strand
Strand 2
A
532 538anti-parallel
Strand 3
A
645 651anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 639first strand
Strand 2
A
544 551anti-parallel
Strand 3
A
657 667anti-parallel
Strand 4
A
671 674anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 639first strand
Strand 2
A
544 551anti-parallel
Strand 3
A
657 667anti-parallel
Strand 4
A
679 683anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 692first strand
Strand 2
A
702 711anti-parallel
Strand 3
A
754 762anti-parallel
Strand 4
A
730 732anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 692first strand
Strand 2
A
702 711anti-parallel
Strand 3
A
1294 1295anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 698first strand
Strand 2
A
782 792parallel
Strand 3
A
766 775anti-parallel
Strand 4
A
717 724anti-parallel
Strand 5
A
741 748anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
800 819first strand
Strand 2
A
1167 1185anti-parallel
Strand 3
A
1132 1139anti-parallel
Strand 4
A
1143 1148anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
800 819first strand
Strand 2
A
1167 1185anti-parallel
Strand 3
A
832 838anti-parallel
Strand 4
A
1159 1160anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1054 1056first strand
Strand 2
A
1061 1063anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1193 1195first strand
Strand 2
A
1313 1318anti-parallel
Strand 3
A
1300 1306anti-parallel
Strand 4
A
1232 1237anti-parallel
Strand 5
A
1269 1274anti-parallel
Strand 6
A
1260 1264anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1197 1204first strand
Strand 2
A
1211 1220anti-parallel
Strand 3
A
1282 1290anti-parallel
Strand 4
A
1242 1250anti-parallel
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