Analysis of interatomic Contacts of Structural Units in PDB entry:
4D9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4D9J entry

There are 12 chains in PDB entry 4D9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 1	ALA 438
B	PRO 1	ALA 438
C	PRO 1	ALA 438
D	PRO 1	ALA 438
E	PRO 1	ALA 438
F	PRO 1	ALA 438
G	PRO 1	ALA 438
H	PRO 1	ALA 438
I	PRO 1	ALA 438
J	PRO 1	ALA 438
K	PRO 1	ALA 438
L	PRO 1	ALA 438

There are265 helices in PDB entry 4D9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	35	38	Right-handed 310
Helix 2	2	A	39	50	Right-handed alpha
Helix 3	3	A	72	88	Right-handed alpha
Helix 4	4	A	99	112	Right-handed alpha
Helix 5	5	A	141	168	Right-handed alpha
Helix 6	6	A	169	174	Right-handed alpha
Helix 7	7	A	179	192	Right-handed alpha
Helix 8	8	A	194	201	Right-handed alpha
Helix 9	9	A	202	205	Right-handed 310
Helix 10	10	A	212	216	Right-handed 310
Helix 11	11	A	232	235	Right-handed 310
Helix 12	12	A	236	244	Right-handed alpha
Helix 13	13	A	263	279	Right-handed alpha
Helix 14	14	A	279	295	Right-handed alpha
Helix 15	15	A	301	317	Right-handed alpha
Helix 16	16	A	321	331	Right-handed alpha
Helix 17	17	A	336	351	Right-handed alpha
Helix 18	18	A	361	367	Right-handed alpha
Helix 19	19	A	372	388	Right-handed alpha
Helix 20	20	A	391	399	Right-handed alpha
Helix 21	21	A	403	416	Right-handed alpha
Helix 22	22	A	422	438	Right-handed alpha
Helix 23	23	B	35	38	Right-handed 310
Helix 24	24	B	39	50	Right-handed alpha
Helix 25	25	B	72	88	Right-handed alpha
Helix 26	26	B	99	112	Right-handed alpha
Helix 27	27	B	141	155	Right-handed alpha
Helix 28	28	B	155	168	Right-handed alpha
Helix 29	29	B	169	174	Right-handed alpha
Helix 30	30	B	179	192	Right-handed alpha
Helix 31	31	B	194	201	Right-handed alpha
Helix 32	32	B	202	205	Right-handed 310
Helix 33	33	B	212	216	Right-handed 310
Helix 34	34	B	232	235	Right-handed 310
Helix 35	35	B	236	244	Right-handed alpha
Helix 36	36	B	263	296	Right-handed alpha
Helix 37	37	B	301	317	Right-handed alpha
Helix 38	38	B	321	331	Right-handed alpha
Helix 39	39	B	336	351	Right-handed alpha
Helix 40	40	B	361	367	Right-handed alpha
Helix 41	41	B	372	387	Right-handed alpha
Helix 42	42	B	391	399	Right-handed alpha
Helix 43	43	B	403	417	Right-handed alpha
Helix 44	44	B	422	437	Right-handed alpha
Helix 45	45	C	35	38	Right-handed 310
Helix 46	46	C	39	50	Right-handed alpha
Helix 47	47	C	72	88	Right-handed alpha
Helix 48	48	C	99	112	Right-handed alpha
Helix 49	49	C	141	155	Right-handed alpha
Helix 50	50	C	155	168	Right-handed alpha
Helix 51	51	C	169	174	Right-handed alpha
Helix 52	52	C	179	192	Right-handed alpha
Helix 53	53	C	194	201	Right-handed alpha
Helix 54	54	C	202	205	Right-handed 310
Helix 55	55	C	212	216	Right-handed 310
Helix 56	56	C	232	235	Right-handed 310
Helix 57	57	C	236	244	Right-handed alpha
Helix 58	58	C	263	279	Right-handed alpha
Helix 59	59	C	279	295	Right-handed alpha
Helix 60	60	C	301	316	Right-handed alpha
Helix 61	61	C	321	331	Right-handed alpha
Helix 62	62	C	336	351	Right-handed alpha
Helix 63	63	C	361	367	Right-handed alpha
Helix 64	64	C	372	387	Right-handed alpha
Helix 65	65	C	391	399	Right-handed alpha
Helix 66	66	C	403	416	Right-handed alpha
Helix 67	67	C	422	437	Right-handed alpha
Helix 68	68	D	35	38	Right-handed 310
Helix 69	69	D	39	50	Right-handed alpha
Helix 70	70	D	72	88	Right-handed alpha
Helix 71	71	D	99	112	Right-handed alpha
Helix 72	72	D	141	168	Right-handed alpha
Helix 73	73	D	169	174	Right-handed alpha
Helix 74	74	D	179	192	Right-handed alpha
Helix 75	75	D	194	201	Right-handed alpha
Helix 76	76	D	202	205	Right-handed 310
Helix 77	77	D	212	216	Right-handed 310
Helix 78	78	D	232	235	Right-handed 310
Helix 79	79	D	236	244	Right-handed alpha
Helix 80	80	D	263	279	Right-handed alpha
Helix 81	81	D	279	295	Right-handed alpha
Helix 82	82	D	301	316	Right-handed alpha
Helix 83	83	D	321	331	Right-handed alpha
Helix 84	84	D	336	351	Right-handed alpha
Helix 85	85	D	361	369	Right-handed alpha
Helix 86	86	D	372	388	Right-handed alpha
Helix 87	87	D	391	399	Right-handed alpha
Helix 88	88	D	403	416	Right-handed alpha
Helix 89	89	D	422	437	Right-handed alpha
Helix 90	90	E	35	38	Right-handed 310
Helix 91	91	E	39	50	Right-handed alpha
Helix 92	92	E	72	88	Right-handed alpha
Helix 93	93	E	99	112	Right-handed alpha
Helix 94	94	E	141	168	Right-handed alpha
Helix 95	95	E	169	174	Right-handed alpha
Helix 96	96	E	179	192	Right-handed alpha
Helix 97	97	E	194	201	Right-handed alpha
Helix 98	98	E	202	205	Right-handed 310
Helix 99	99	E	212	216	Right-handed 310
Helix 100	100	E	232	235	Right-handed 310
Helix 101	101	E	236	244	Right-handed alpha
Helix 102	102	E	263	295	Right-handed alpha
Helix 103	103	E	301	317	Right-handed alpha
Helix 104	104	E	321	331	Right-handed alpha
Helix 105	105	E	336	351	Right-handed alpha
Helix 106	106	E	372	387	Right-handed alpha
Helix 107	107	E	391	399	Right-handed alpha
Helix 108	108	E	403	417	Right-handed alpha
Helix 109	109	E	422	437	Right-handed alpha
Helix 110	110	F	35	38	Right-handed 310
Helix 111	111	F	39	50	Right-handed alpha
Helix 112	112	F	72	88	Right-handed alpha
Helix 113	113	F	99	112	Right-handed alpha
Helix 114	114	F	141	168	Right-handed alpha
Helix 115	115	F	169	174	Right-handed alpha
Helix 116	116	F	179	192	Right-handed alpha
Helix 117	117	F	194	201	Right-handed alpha
Helix 118	118	F	202	205	Right-handed 310
Helix 119	119	F	212	216	Right-handed 310
Helix 120	120	F	232	235	Right-handed 310
Helix 121	121	F	236	244	Right-handed alpha
Helix 122	122	F	263	279	Right-handed alpha
Helix 123	123	F	279	295	Right-handed alpha
Helix 124	124	F	301	316	Right-handed alpha
Helix 125	125	F	321	331	Right-handed alpha
Helix 126	126	F	336	351	Right-handed alpha
Helix 127	127	F	361	367	Right-handed alpha
Helix 128	128	F	372	388	Right-handed alpha
Helix 129	129	F	391	399	Right-handed alpha
Helix 130	130	F	403	416	Right-handed alpha
Helix 131	131	F	422	437	Right-handed alpha
Helix 132	132	G	35	38	Right-handed 310
Helix 133	133	G	39	50	Right-handed alpha
Helix 134	134	G	72	88	Right-handed alpha
Helix 135	135	G	99	112	Right-handed alpha
Helix 136	136	G	141	168	Right-handed alpha
Helix 137	137	G	169	174	Right-handed alpha
Helix 138	138	G	179	192	Right-handed alpha
Helix 139	139	G	194	201	Right-handed alpha
Helix 140	140	G	201	206	Right-handed alpha
Helix 141	141	G	212	216	Right-handed 310
Helix 142	142	G	232	235	Right-handed 310
Helix 143	143	G	236	244	Right-handed alpha
Helix 144	144	G	263	279	Right-handed alpha
Helix 145	145	G	279	295	Right-handed alpha
Helix 146	146	G	301	316	Right-handed alpha
Helix 147	147	G	321	331	Right-handed alpha
Helix 148	148	G	336	351	Right-handed alpha
Helix 149	149	G	361	367	Right-handed alpha
Helix 150	150	G	372	388	Right-handed alpha
Helix 151	151	G	391	399	Right-handed alpha
Helix 152	152	G	403	416	Right-handed alpha
Helix 153	153	G	422	437	Right-handed alpha
Helix 154	154	H	35	38	Right-handed 310
Helix 155	155	H	39	50	Right-handed alpha
Helix 156	156	H	72	88	Right-handed alpha
Helix 157	157	H	99	112	Right-handed alpha
Helix 158	158	H	141	155	Right-handed alpha
Helix 159	159	H	155	168	Right-handed alpha
Helix 160	160	H	169	174	Right-handed alpha
Helix 161	161	H	179	192	Right-handed alpha
Helix 162	162	H	194	201	Right-handed alpha
Helix 163	163	H	202	205	Right-handed 310
Helix 164	164	H	212	216	Right-handed 310
Helix 165	165	H	232	235	Right-handed 310
Helix 166	166	H	236	244	Right-handed alpha
Helix 167	167	H	263	295	Right-handed alpha
Helix 168	168	H	301	317	Right-handed alpha
Helix 169	169	H	321	331	Right-handed alpha
Helix 170	170	H	336	351	Right-handed alpha
Helix 171	171	H	361	367	Right-handed alpha
Helix 172	172	H	372	387	Right-handed alpha
Helix 173	173	H	391	399	Right-handed alpha
Helix 174	174	H	403	417	Right-handed alpha
Helix 175	175	H	422	437	Right-handed alpha
Helix 176	176	I	35	38	Right-handed 310
Helix 177	177	I	39	50	Right-handed alpha
Helix 178	178	I	72	88	Right-handed alpha
Helix 179	179	I	99	112	Right-handed alpha
Helix 180	180	I	141	155	Right-handed alpha
Helix 181	181	I	155	168	Right-handed alpha
Helix 182	182	I	169	174	Right-handed alpha
Helix 183	183	I	179	192	Right-handed alpha
Helix 184	184	I	196	201	Right-handed alpha
Helix 185	185	I	202	205	Right-handed 310
Helix 186	186	I	212	216	Right-handed 310
Helix 187	187	I	232	235	Right-handed 310
Helix 188	188	I	236	244	Right-handed alpha
Helix 189	189	I	263	279	Right-handed alpha
Helix 190	190	I	279	295	Right-handed alpha
Helix 191	191	I	301	317	Right-handed alpha
Helix 192	192	I	321	331	Right-handed alpha
Helix 193	193	I	336	351	Right-handed alpha
Helix 194	194	I	361	367	Right-handed alpha
Helix 195	195	I	372	388	Right-handed alpha
Helix 196	196	I	391	399	Right-handed alpha
Helix 197	197	I	403	416	Right-handed alpha
Helix 198	198	I	422	437	Right-handed alpha
Helix 199	199	J	35	38	Right-handed 310
Helix 200	200	J	39	50	Right-handed alpha
Helix 201	201	J	72	88	Right-handed alpha
Helix 202	202	J	99	112	Right-handed alpha
Helix 203	203	J	141	155	Right-handed alpha
Helix 204	204	J	155	168	Right-handed alpha
Helix 205	205	J	169	174	Right-handed alpha
Helix 206	206	J	179	192	Right-handed alpha
Helix 207	207	J	194	201	Right-handed alpha
Helix 208	208	J	202	205	Right-handed 310
Helix 209	209	J	212	216	Right-handed 310
Helix 210	210	J	232	235	Right-handed 310
Helix 211	211	J	236	244	Right-handed alpha
Helix 212	212	J	263	295	Right-handed alpha
Helix 213	213	J	301	316	Right-handed alpha
Helix 214	214	J	321	331	Right-handed alpha
Helix 215	215	J	336	351	Right-handed alpha
Helix 216	216	J	361	367	Right-handed alpha
Helix 217	217	J	372	387	Right-handed alpha
Helix 218	218	J	391	399	Right-handed alpha
Helix 219	219	J	403	417	Right-handed alpha
Helix 220	220	J	422	437	Right-handed alpha
Helix 221	221	K	35	38	Right-handed 310
Helix 222	222	K	39	50	Right-handed alpha
Helix 223	223	K	72	88	Right-handed alpha
Helix 224	224	K	99	112	Right-handed alpha
Helix 225	225	K	141	155	Right-handed alpha
Helix 226	226	K	155	168	Right-handed alpha
Helix 227	227	K	169	174	Right-handed alpha
Helix 228	228	K	179	192	Right-handed alpha
Helix 229	229	K	196	201	Right-handed alpha
Helix 230	230	K	202	205	Right-handed 310
Helix 231	231	K	212	216	Right-handed 310
Helix 232	232	K	232	235	Right-handed 310
Helix 233	233	K	236	244	Right-handed alpha
Helix 234	234	K	263	279	Right-handed alpha
Helix 235	235	K	279	295	Right-handed alpha
Helix 236	236	K	302	316	Right-handed alpha
Helix 237	237	K	321	331	Right-handed alpha
Helix 238	238	K	336	351	Right-handed alpha
Helix 239	239	K	361	367	Right-handed alpha
Helix 240	240	K	372	388	Right-handed alpha
Helix 241	241	K	391	399	Right-handed alpha
Helix 242	242	K	403	416	Right-handed alpha
Helix 243	243	K	422	437	Right-handed alpha
Helix 244	244	L	35	38	Right-handed 310
Helix 245	245	L	39	50	Right-handed alpha
Helix 246	246	L	72	88	Right-handed alpha
Helix 247	247	L	99	112	Right-handed alpha
Helix 248	248	L	141	155	Right-handed alpha
Helix 249	249	L	155	168	Right-handed alpha
Helix 250	250	L	169	174	Right-handed alpha
Helix 251	251	L	179	192	Right-handed alpha
Helix 252	252	L	194	201	Right-handed alpha
Helix 253	253	L	202	205	Right-handed 310
Helix 254	254	L	212	216	Right-handed 310
Helix 255	255	L	232	235	Right-handed 310
Helix 256	256	L	236	244	Right-handed alpha
Helix 257	257	L	263	295	Right-handed alpha
Helix 258	258	L	302	317	Right-handed alpha
Helix 259	259	L	321	331	Right-handed alpha
Helix 260	260	L	336	351	Right-handed alpha
Helix 261	261	L	361	367	Right-handed alpha
Helix 262	262	L	372	388	Right-handed alpha
Helix 263	263	L	391	399	Right-handed alpha
Helix 264	264	L	403	416	Right-handed alpha
Helix 265	265	L	422	437	Right-handed alpha

There are 12 sheets in PDB entry 4D9J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	52	56	anti-parallel
Strand 4	A	25	29	parallel
Strand 5	A	92	97	parallel
Strand 6	A	116	122	parallel
Strand 7	A	220	225	parallel
Strand 8	A	248	252	parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	14	20	anti-parallel
Strand 3	B	52	56	anti-parallel
Strand 4	B	25	29	parallel
Strand 5	B	92	97	parallel
Strand 6	B	116	122	parallel
Strand 7	B	220	225	parallel
Strand 8	B	248	252	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	8	first strand
Strand 2	C	11	20	anti-parallel
Strand 3	C	52	56	anti-parallel
Strand 4	C	25	29	parallel
Strand 5	C	92	97	parallel
Strand 6	C	116	122	parallel
Strand 7	C	220	225	parallel
Strand 8	C	248	252	parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	14	20	anti-parallel
Strand 3	D	52	56	anti-parallel
Strand 4	D	25	29	parallel
Strand 5	D	92	97	parallel
Strand 6	D	116	122	parallel
Strand 7	D	221	225	parallel
Strand 8	D	248	252	parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	8	first strand
Strand 2	E	11	20	anti-parallel
Strand 3	E	52	56	anti-parallel
Strand 4	E	25	29	parallel
Strand 5	E	92	97	parallel
Strand 6	E	116	122	parallel
Strand 7	E	221	225	parallel
Strand 8	E	248	252	parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	4	first strand
Strand 2	F	14	20	anti-parallel
Strand 3	F	52	56	anti-parallel
Strand 4	F	25	29	parallel
Strand 5	F	92	97	parallel
Strand 6	F	116	122	parallel
Strand 7	F	221	225	parallel
Strand 8	F	248	252	parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	4	first strand
Strand 2	G	14	20	anti-parallel
Strand 3	G	52	56	anti-parallel
Strand 4	G	25	29	parallel
Strand 5	G	92	97	parallel
Strand 6	G	116	122	parallel
Strand 7	G	220	225	parallel
Strand 8	G	248	252	parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	14	20	anti-parallel
Strand 3	H	52	56	anti-parallel
Strand 4	H	25	29	parallel
Strand 5	H	92	97	parallel
Strand 6	H	116	122	parallel
Strand 7	H	221	225	parallel
Strand 8	H	248	252	parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	4	first strand
Strand 2	I	14	20	anti-parallel
Strand 3	I	52	56	anti-parallel
Strand 4	I	25	29	parallel
Strand 5	I	92	97	parallel
Strand 6	I	116	122	parallel
Strand 7	I	220	225	parallel
Strand 8	I	248	252	parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	4	first strand
Strand 2	J	14	20	anti-parallel
Strand 3	J	52	56	anti-parallel
Strand 4	J	25	29	parallel
Strand 5	J	92	97	parallel
Strand 6	J	116	122	parallel
Strand 7	J	220	225	parallel
Strand 8	J	248	252	parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	4	first strand
Strand 2	K	14	20	anti-parallel
Strand 3	K	52	56	anti-parallel
Strand 4	K	25	29	parallel
Strand 5	K	92	97	parallel
Strand 6	K	116	122	parallel
Strand 7	K	220	225	parallel
Strand 8	K	248	252	parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	2	4	first strand
Strand 2	L	14	20	anti-parallel
Strand 3	L	52	56	anti-parallel
Strand 4	L	25	29	parallel
Strand 5	L	92	97	parallel
Strand 6	L	116	122	parallel
Strand 7	L	220	225	parallel
Strand 8	L	248	252	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4D9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
4D9J