Analysis of interatomic Contacts of Structural Units in PDB entry:
4DAB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DAB entry

There is 1 chain in PDB entry 4DAB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2SER 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4DAB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 33Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
65 81Right-handed alpha
Helix 4
4
A
114 121Right-handed alpha
Helix 5
5
A
130 145Right-handed alpha
Helix 6
6
A
165 172Right-handed alpha
Helix 7
7
A
180 191Right-handed alpha
Helix 8
8
A
212 230Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4DAB.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 40first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
15 18parallel
Strand 5
A
84 93parallel
Strand 6
A
194 204parallel
Strand 7
A
103 111anti-parallel
Strand 8
A
148 155parallel
Strand 9
A
176 178parallel
Strand 10
A
84 93anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il