Analysis of interatomic Contacts of Structural Units in PDB entry:
4DAM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4DAM entry

There are 12 chains in PDB entry 4DAM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	ALA 112
B	MET 1	GLY 110
C	SER 0	THR 111
D	MET 1	ARG 109
E	SER 0	THR 111
F	MET 1	GLY 110
G	SER 0	GLY 110
H	MET 1	GLY 110
I	MET 1	GLY 110
J	MET 1	ALA 112
K	SER 0	GLY 110
L	MET 1	GLN 60

There are 12 helices in PDB entry 4DAM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	59	69	Right-handed alpha
Helix 2	2	B	59	69	Right-handed alpha
Helix 3	3	C	59	69	Right-handed alpha
Helix 4	4	D	59	69	Right-handed alpha
Helix 5	5	E	59	69	Right-handed alpha
Helix 6	6	F	59	69	Right-handed alpha
Helix 7	7	G	59	69	Right-handed alpha
Helix 8	8	H	59	67	Right-handed alpha
Helix 9	9	I	59	69	Right-handed alpha
Helix 10	10	J	59	69	Right-handed alpha
Helix 11	11	K	59	69	Right-handed alpha
Helix 12	12	L	59	69	Right-handed alpha

There are 12 sheets in PDB entry 4DAM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	21	first strand
Strand 2	A	24	39	anti-parallel
Strand 3	A	44	58	anti-parallel
Strand 4	A	91	105	parallel
Strand 5	A	74	88	anti-parallel
Strand 6	A	5	12	anti-parallel
Strand 7	A	24	39	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	24	38	anti-parallel
Strand 3	B	45	58	anti-parallel
Strand 4	B	91	105	parallel
Strand 5	B	74	88	anti-parallel
Strand 6	B	5	12	anti-parallel
Strand 7	B	24	38	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand
Strand 2	C	24	37	anti-parallel
Strand 3	C	46	58	anti-parallel
Strand 4	C	95	105	parallel
Strand 5	C	74	84	anti-parallel
Strand 6	C	5	12	anti-parallel
Strand 7	C	24	37	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	21	first strand
Strand 2	D	24	38	anti-parallel
Strand 3	D	45	58	anti-parallel
Strand 4	D	95	105	parallel
Strand 5	D	74	84	anti-parallel
Strand 6	D	5	12	anti-parallel
Strand 7	D	24	38	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	21	first strand
Strand 2	E	24	39	anti-parallel
Strand 3	E	44	58	anti-parallel
Strand 4	E	95	105	parallel
Strand 5	E	74	84	anti-parallel
Strand 6	E	5	12	anti-parallel
Strand 7	E	24	39	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	21	first strand
Strand 2	F	24	39	anti-parallel
Strand 3	F	44	58	anti-parallel
Strand 4	F	91	105	parallel
Strand 5	F	74	88	anti-parallel
Strand 6	F	5	12	anti-parallel
Strand 7	F	24	39	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	21	first strand
Strand 2	G	24	37	anti-parallel
Strand 3	G	46	58	anti-parallel
Strand 4	G	95	105	parallel
Strand 5	G	74	84	anti-parallel
Strand 6	G	5	12	anti-parallel
Strand 7	G	24	37	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	21	first strand
Strand 2	H	24	38	anti-parallel
Strand 3	H	45	58	anti-parallel
Strand 4	H	91	105	parallel
Strand 5	H	74	88	anti-parallel
Strand 6	H	5	12	anti-parallel
Strand 7	H	24	38	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	21	first strand
Strand 2	I	24	39	anti-parallel
Strand 3	I	44	58	anti-parallel
Strand 4	I	91	105	parallel
Strand 5	I	74	88	anti-parallel
Strand 6	I	5	12	anti-parallel
Strand 7	I	24	39	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	17	21	first strand
Strand 2	J	24	37	anti-parallel
Strand 3	J	46	58	anti-parallel
Strand 4	J	95	105	parallel
Strand 5	J	74	84	anti-parallel
Strand 6	J	5	12	anti-parallel
Strand 7	J	24	37	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	17	21	first strand
Strand 2	K	24	39	anti-parallel
Strand 3	K	44	58	anti-parallel
Strand 4	K	91	105	parallel
Strand 5	K	74	88	anti-parallel
Strand 6	K	5	12	anti-parallel
Strand 7	K	24	39	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	21	first strand
Strand 2	L	24	38	anti-parallel
Strand 3	L	45	58	anti-parallel
Strand 4	L	95	105	parallel
Strand 5	L	74	84	anti-parallel
Strand 6	L	5	12	anti-parallel
Strand 7	L	24	38	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4DAM

Analysis of interatomic Contacts of Structural Units in PDB entry:
4DAM