Analysis of interatomic Contacts of Structural Units in PDB entry:
4DB4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DB4 entry

There are 6 chains in PDB entry 4DB4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 341ASP 596
B
 SER 341ASP 596
C
 G -7 C 6
D
 G 7 C 20
E
 G 7 C 20
F
 G -7 C 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 4DB4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
353 370Right-handed alpha
Helix 2
2
A
382 398Right-handed alpha
Helix 3
3
A
411 425Right-handed alpha
Helix 4
4
A
457 465Right-handed alpha
Helix 5
5
A
485 496Right-handed alpha
Helix 6
6
A
508 519Right-handed alpha
Helix 7
7
A
522 539Right-handed alpha
Helix 8
8
A
540 545Right-handed alpha
Helix 9
9
A
547 557Right-handed alpha
Helix 10
10
A
557 563Right-handed alpha
Helix 11
11
A
573 581Right-handed alpha
Helix 12
12
A
587 591Right-handed alpha
Helix 13
13
B
353 370Right-handed alpha
Helix 14
14
B
382 398Right-handed alpha
Helix 15
15
B
411 425Right-handed alpha
Helix 16
16
B
457 465Right-handed alpha
Helix 17
17
B
485 496Right-handed alpha
Helix 18
18
B
508 519Right-handed alpha
Helix 19
19
B
522 539Right-handed alpha
Helix 20
20
B
540 545Right-handed alpha
Helix 21
21
B
547 557Right-handed alpha
Helix 22
22
B
557 563Right-handed alpha
Helix 23
23
B
573 581Right-handed alpha
Helix 24
24
B
587 591Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4DB4. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 406first strand
Strand 2
A
428 432parallel
Strand 3
A
375 379parallel
Strand 4
A
447 451parallel
Strand 5
A
475 481parallel
Strand 6
A
343 349parallel
Strand 7
A
501 505parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 572first strand
Strand 2
A
592 594parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 406first strand
Strand 2
B
428 432parallel
Strand 3
B
375 379parallel
Strand 4
B
447 451parallel
Strand 5
B
475 481parallel
Strand 6
B
343 349parallel
Strand 7
B
501 505parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 572first strand
Strand 2
B
592 594parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il