Analysis of interatomic Contacts of Structural Units in PDB entry:
4DBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DBB entry

There is 1 chain in PDB entry 4DBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 455GLN 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 4DBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
480 494Right-handed alpha
Helix 2
2
A
598 615Right-handed alpha
Helix 3
3
A
616 618Right-handed 310
Helix 4
4
A
624 628Right-handed 310
Helix 5
5
A
629 640Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 4DBB.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 543first strand
Strand 2
A
527 532anti-parallel
Strand 3
A
517 524anti-parallel
Strand 4
A
460 475anti-parallel
Strand 5
A
587 595anti-parallel
Strand 6
A
556 563anti-parallel
Strand 7
A
547 553anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il