Analysis of interatomic Contacts of Structural Units in PDB entry:
4DBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DBG entry

There are 2 chains in PDB entry 4DBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 52ALA 133
B
 ASP 482SER 627
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4DBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 93Right-handed alpha
Helix 2
2
A
95 97Right-handed 310
Helix 3
3
A
114 118Right-handed 310
Helix 4
4
B
483 494Right-handed alpha
Helix 5
5
B
504 516Right-handed alpha
Helix 6
6
B
520 528Right-handed alpha
Helix 7
7
B
530 543Right-handed alpha
Helix 8
8
B
544 547Right-handed 310
Helix 9
9
B
550 561Right-handed alpha
Helix 10
10
B
564 586Right-handed alpha
Helix 11
11
B
589 592Right-handed 310
Helix 12
12
B
593 601Right-handed alpha
Helix 13
13
B
604 617Right-handed alpha
Helix 14
14
B
617 626Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4DBG.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 75first strand
Strand 2
A
55 63anti-parallel
Strand 3
A
125 130parallel
Strand 4
A
99 103anti-parallel
Strand 5
A
106 108anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il