Analysis of interatomic Contacts of Structural Units in PDB entry:
4DBX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DBX entry

There is 1 chain in PDB entry 4DBX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2ARG 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 4DBX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 17Right-handed alpha
Helix 2
2
A
50 67Right-handed alpha
Helix 3
3
A
104 111Right-handed alpha
Helix 4
4
A
112 132Right-handed alpha
Helix 5
5
A
139 143Right-handed 310
Helix 6
6
A
145 161Right-handed alpha
Helix 7
7
A
166 183Right-handed alpha
Helix 8
8
A
184 187Right-handed 310
Helix 9
9
A
199 201Right-handed 310
Helix 10
10
A
227 232Right-handed alpha
Helix 11
11
A
241 252Right-handed alpha
Helix 12
12
A
256 282Right-handed alpha
Helix 13
13
A
284 296Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4DBX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 30first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
43 48anti-parallel
Strand 4
A
93 96anti-parallel
Strand 5
A
78 81anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
203 206anti-parallel
Strand 3
A
211 215anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
222 224anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il