Analysis of interatomic Contacts of Structural Units in PDB entry:
4DCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DCM entry

There is 1 chain in PDB entry 4DCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 8LEU 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4DCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 38Right-handed alpha
Helix 2
2
A
56 62Right-handed alpha
Helix 3
3
A
63 66Right-handed 310
Helix 4
4
A
73 87Right-handed alpha
Helix 5
5
A
90 94Right-handed 310
Helix 6
6
A
117 130Right-handed alpha
Helix 7
7
A
145 147Right-handed 310
Helix 8
8
A
148 159Right-handed alpha
Helix 9
9
A
214 223Right-handed alpha
Helix 10
10
A
240 250Right-handed alpha
Helix 11
11
A
261 276Right-handed alpha
Helix 12
12
A
277 281Right-handed 310
Helix 13
13
A
317 329Right-handed alpha
Helix 14
14
A
345 355Right-handed alpha
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There are 3 sheets in PDB entry 4DCM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
68 71parallel
Strand 3
A
48 51parallel
Strand 4
A
109 113parallel
Strand 5
A
137 143parallel
Strand 6
A
171 176anti-parallel
Strand 7
A
162 164anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 194first strand
Strand 2
A
199 203anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
254 259parallel
Strand 3
A
231 235parallel
Strand 4
A
299 304parallel
Strand 5
A
330 341parallel
Strand 6
A
366 372anti-parallel
Strand 7
A
358 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il