Analysis of interatomic Contacts of Structural Units in PDB entry:
4DEJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DEJ entry

There are 12 chains in PDB entry 4DEJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7ALA 208
B
 ARG 8ALA 208
C
 ARG 8ALA 208
D
 ASN 6ALA 208
E
 SER 9ALA 208
F
 SER 9ALA 205
G
 ARG 8ALA 208
H
 ARG 8ALA 208
I
 SER 9ALA 208
J
 ARG 8GLU 209
K
 ARG 8ALA 208
L
 ARG 8ASN 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are133 helices in PDB entry 4DEJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 33Right-handed alpha
Helix 2
2
A
47 54Right-handed alpha
Helix 3
3
A
72 84Right-handed alpha
Helix 4
4
A
93 111Right-handed alpha
Helix 5
5
A
111 121Right-handed alpha
Helix 6
6
A
123 136Right-handed alpha
Helix 7
7
A
138 143Right-handed alpha
Helix 8
8
A
154 164Right-handed alpha
Helix 9
9
A
164 169Right-handed alpha
Helix 10
10
A
176 189Right-handed alpha
Helix 11
11
A
190 197Right-handed alpha
Helix 12
12
A
198 207Right-handed alpha
Helix 13
13
B
19 33Right-handed alpha
Helix 14
14
B
47 54Right-handed alpha
Helix 15
15
B
72 84Right-handed alpha
Helix 16
16
B
93 111Right-handed alpha
Helix 17
17
B
111 120Right-handed alpha
Helix 18
18
B
122 135Right-handed alpha
Helix 19
19
B
154 164Right-handed alpha
Helix 20
20
B
176 189Right-handed alpha
Helix 21
21
B
190 196Right-handed alpha
Helix 22
22
B
198 208Right-handed alpha
Helix 23
23
C
19 33Right-handed alpha
Helix 24
24
C
47 54Right-handed alpha
Helix 25
25
C
72 84Right-handed alpha
Helix 26
26
C
93 121Right-handed alpha
Helix 27
27
C
123 135Right-handed alpha
Helix 28
28
C
136 143Right-handed alpha
Helix 29
29
C
152 164Right-handed alpha
Helix 30
30
C
176 189Right-handed alpha
Helix 31
31
C
190 197Right-handed alpha
Helix 32
32
C
198 203Right-handed alpha
Helix 33
33
C
204 206Right-handed 310
Helix 34
34
D
19 33Right-handed alpha
Helix 35
35
D
47 54Right-handed alpha
Helix 36
36
D
72 84Right-handed alpha
Helix 37
37
D
93 111Right-handed alpha
Helix 38
38
D
111 119Right-handed alpha
Helix 39
39
D
122 136Right-handed alpha
Helix 40
40
D
136 143Right-handed alpha
Helix 41
41
D
154 164Right-handed alpha
Helix 42
42
D
176 189Right-handed alpha
Helix 43
43
D
190 195Right-handed alpha
Helix 44
44
D
198 208Right-handed alpha
Helix 45
45
E
19 33Right-handed alpha
Helix 46
46
E
47 54Right-handed alpha
Helix 47
47
E
72 84Right-handed alpha
Helix 48
48
E
93 111Right-handed alpha
Helix 49
49
E
111 120Right-handed alpha
Helix 50
50
E
122 135Right-handed alpha
Helix 51
51
E
136 141Right-handed alpha
Helix 52
52
E
154 164Right-handed alpha
Helix 53
53
E
176 189Right-handed alpha
Helix 54
54
E
190 196Right-handed alpha
Helix 55
55
E
198 207Right-handed alpha
Helix 56
56
F
19 33Right-handed alpha
Helix 57
57
F
47 54Right-handed alpha
Helix 58
58
F
72 84Right-handed alpha
Helix 59
59
F
93 119Right-handed alpha
Helix 60
60
F
122 136Right-handed alpha
Helix 61
61
F
137 140Right-handed 310
Helix 62
62
F
154 164Right-handed alpha
Helix 63
63
F
176 189Right-handed alpha
Helix 64
64
F
190 197Right-handed alpha
Helix 65
65
F
198 203Right-handed alpha
Helix 66
66
G
19 33Right-handed alpha
Helix 67
67
G
47 52Right-handed alpha
Helix 68
68
G
72 84Right-handed alpha
Helix 69
69
G
93 111Right-handed alpha
Helix 70
70
G
111 121Right-handed alpha
Helix 71
71
G
123 136Right-handed alpha
Helix 72
72
G
136 143Right-handed alpha
Helix 73
73
G
154 164Right-handed alpha
Helix 74
74
G
176 189Right-handed alpha
Helix 75
75
G
190 197Right-handed alpha
Helix 76
76
G
198 204Right-handed alpha
Helix 77
77
H
19 33Right-handed alpha
Helix 78
78
H
47 54Right-handed alpha
Helix 79
79
H
72 84Right-handed alpha
Helix 80
80
H
93 111Right-handed alpha
Helix 81
81
H
111 119Right-handed alpha
Helix 82
82
H
123 136Right-handed alpha
Helix 83
83
H
137 142Right-handed 310
Helix 84
84
H
154 164Right-handed alpha
Helix 85
85
H
164 169Right-handed alpha
Helix 86
86
H
176 189Right-handed alpha
Helix 87
87
H
190 195Right-handed alpha
Helix 88
88
H
198 204Right-handed alpha
Helix 89
89
I
19 33Right-handed alpha
Helix 90
90
I
47 54Right-handed alpha
Helix 91
91
I
72 84Right-handed alpha
Helix 92
92
I
93 111Right-handed alpha
Helix 93
93
I
111 121Right-handed alpha
Helix 94
94
I
122 136Right-handed alpha
Helix 95
95
I
138 143Right-handed alpha
Helix 96
96
I
154 164Right-handed alpha
Helix 97
97
I
176 189Right-handed alpha
Helix 98
98
I
190 195Right-handed alpha
Helix 99
99
I
198 208Right-handed alpha
Helix 100
100
J
19 33Right-handed alpha
Helix 101
101
J
47 54Right-handed alpha
Helix 102
102
J
72 84Right-handed alpha
Helix 103
103
J
93 110Right-handed alpha
Helix 104
104
J
110 119Right-handed alpha
Helix 105
105
J
123 136Right-handed alpha
Helix 106
106
J
137 143Right-handed alpha
Helix 107
107
J
154 164Right-handed alpha
Helix 108
108
J
176 189Right-handed alpha
Helix 109
109
J
190 197Right-handed alpha
Helix 110
110
J
198 207Right-handed alpha
Helix 111
111
K
19 33Right-handed alpha
Helix 112
112
K
47 54Right-handed alpha
Helix 113
113
K
72 84Right-handed alpha
Helix 114
114
K
93 110Right-handed alpha
Helix 115
115
K
110 121Right-handed alpha
Helix 116
116
K
122 136Right-handed alpha
Helix 117
117
K
137 142Right-handed 310
Helix 118
118
K
154 164Right-handed alpha
Helix 119
119
K
176 189Right-handed alpha
Helix 120
120
K
190 197Right-handed alpha
Helix 121
121
K
198 207Right-handed alpha
Helix 122
122
L
19 33Right-handed alpha
Helix 123
123
L
47 54Right-handed alpha
Helix 124
124
L
72 84Right-handed alpha
Helix 125
125
L
93 119Right-handed alpha
Helix 126
126
L
123 136Right-handed alpha
Helix 127
127
L
137 142Right-handed 310
Helix 128
128
L
154 164Right-handed alpha
Helix 129
129
L
164 169Right-handed alpha
Helix 130
130
L
176 189Right-handed alpha
Helix 131
131
L
190 195Right-handed alpha
Helix 132
132
L
198 203Right-handed alpha
Helix 133
133
L
204 206Right-handed 310
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There are 12 sheets in PDB entry 4DEJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
12 15parallel
Strand 3
A
62 65anti-parallel
Strand 4
A
68 71anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
12 15parallel
Strand 3
B
62 65anti-parallel
Strand 4
B
68 70anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
12 16parallel
Strand 3
C
62 65anti-parallel
Strand 4
C
68 71anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 41first strand
Strand 2
D
12 16parallel
Strand 3
D
62 65anti-parallel
Strand 4
D
68 70anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 41first strand
Strand 2
E
12 16parallel
Strand 3
E
62 65anti-parallel
Strand 4
E
68 71anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
37 41first strand
Strand 2
F
12 16parallel
Strand 3
F
62 64anti-parallel
Strand 4
F
69 71anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
37 40first strand
Strand 2
G
12 15parallel
Strand 3
G
62 65anti-parallel
Strand 4
G
68 71anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
37 38first strand
Strand 2
H
12 14parallel
Strand 3
H
62 65anti-parallel
Strand 4
H
68 71anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
37 41first strand
Strand 2
I
12 16parallel
Strand 3
I
62 65anti-parallel
Strand 4
I
68 71anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
37 41first strand
Strand 2
J
12 16parallel
Strand 3
J
62 65anti-parallel
Strand 4
J
68 71anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
37 38first strand
Strand 2
K
12 14parallel
Strand 3
K
62 65anti-parallel
Strand 4
K
68 71anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
37 41first strand
Strand 2
L
12 16parallel
Strand 3
L
62 65anti-parallel
Strand 4
L
68 71anti-parallel
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