Analysis of interatomic Contacts of Structural Units in PDB entry:
4DG5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4DG5 entry

There is 1 chain in PDB entry 4DG5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4DG5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 9Right-handed 310
Helix 2
2
A
34 50Right-handed alpha
Helix 3
3
A
65 73Right-handed 310
Helix 4
4
A
74 86Right-handed alpha
Helix 5
5
A
97 106Right-handed alpha
Helix 6
6
A
117 123Right-handed 310
Helix 7
7
A
132 141Right-handed alpha
Helix 8
8
A
150 154Right-handed 310
Helix 9
9
A
161 166Right-handed alpha
Helix 10
10
A
173 189Right-handed alpha
Helix 11
11
A
202 214Right-handed alpha
Helix 12
12
A
226 234Right-handed alpha
Helix 13
13
A
244 246Right-handed 310
Helix 14
14
A
247 258Right-handed alpha
Helix 15
15
A
286 288Right-handed 310
Helix 16
16
A
298 308Right-handed alpha
Helix 17
17
A
326 329Right-handed 310
Helix 18
18
A
330 343Right-handed alpha
Helix 19
19
A
352 362Right-handed alpha
Helix 20
20
A
364 368Right-handed 310
Helix 21
21
A
374 383Right-handed alpha
Helix 22
22
A
387 392Right-handed alpha
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There are 3 sheets in PDB entry 4DG5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
112 115parallel
Strand 3
A
53 57parallel
Strand 4
A
15 19parallel
Strand 5
A
145 148parallel
Strand 6
A
170 172parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
219 222parallel
Strand 3
A
194 198parallel
Strand 4
A
314 318parallel
Strand 5
A
347 350parallel
Strand 6
A
370 371parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
267 271anti-parallel
Strand 3
A
293 297anti-parallel
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